Gene Information

Name : dnaB (HEAR2158)
Accession : YP_001100418.1
Strain : Herminiimonas arsenicoxydans
Genome accession: NC_009138
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 2161426 - 2162811 bp
Length : 1386 bp
Strand : -
Note : unwinds double stranded DNA

DNA sequence :
ATGAACAACCGTGCCGATCCGCAAGTAGATTCCCTTCGCGTTCCCCCGCATTCGATAGAAGCCGAGCAATCCGTCCTCGG
CGGCTTGTTGTTGGACAATGCGGCATGGGACCGTATTGCAGACTTCGTCCATCAGGACGATTTTTACCGTTACGATCACC
GCATCATTTTTCAGCACATCGTCAGACTGATCAATGGCTCCCGCCCCGCCGACGTGATTACGGTATTCGAGGCCTTGACC
AATAGCGGCAAGGCAGAAGAAGTAGGCGGCGTCTCCTATCTGAATGCACTGGCGCAAAACACGCCGTCTGCCGCCAATAT
TCGCCGCTATGCTGAAATCGTGCGCGACCGTGGCATTCTGCGCAAGCTGATCACCGTCTCGGATGAAATTTCCGGCCAGG
CTTTCAATCCGCAAGGCAAGGAAGTCAAGCAGATGCTGGATGAGGCCGAGTCCAAGATCTTTGCGATTGCGGAAGAGGGT
TCGCGTGGCGCCCAGGGTTTCCAGGAAATTCAACCGCTGTTGACGCAAGTCGTTGAGCGTATCGACGAACTGTACAACCG
CGACAGCACCAGCGATATCACCGGTGTACCGACAGGCTTTGCCGATCTGGACCGCATGACGTCCGGCCTGCAGCCGGGCG
ACCTGATCATCGTCGCCGGTCGTCCTTCGATGGGTAAAACCGCATTCTCGATCAATATTGGTGAAACCGTCGCAATCGAA
AGCGGCTTGCCGGTTGCAGTCTTCTCGATGGAGATGGGCGGTACACAATTGGCAATGCGTATGCTGGGCTCGGTCGGACG
GCTGGATCAGCATCGCTTGCGTACAGGAAAATTGGCCGATGAAGACTGGCCGCGTCTGACGCATGCGATTCAAAAGATGA
ACGATGCGCAGTTGTACATCGATGAAACGCCGGCATTGAATTCGATCGAATTGCGCGCCCGCTCGCGGCGCCTGTCGCGT
CAGTGCGGCAAGCTCGGCTTGATCATCATCGATTACCTGCAACTGATGTCTGCCAACTCTTCCGGTGAAAACCGGGCGAC
GGAAATCTCAGAAATTTCGCGTAACCTGAAAGGTTTGGCGAAGGAGCTCAATTGTCCGGTGATTGCACTGTCACAGTTGA
ACCGCTCGCTGGAACAGCGTCCGAACAAGCGTCCGGTGATGTCAGATTTGCGCGAATCCGGCGCGATCGAGCAGGATGCC
GACGTGATTCTGTTCATCTATCGCGACGAGGTTTACAACCCGGATTCGCCTGACAAAGGCACGGCGGAAATCATTATTGG
CAAACAGCGTAACGGTCCTATCGGTAGCGTGCGTCTGACCTTCCTGGGTCAATACACGAAGTTTGAAAACTATACCGGTT
CGGCTGCCTTGTATCAGGGCGACTAA

Protein sequence :
MNNRADPQVDSLRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVHQDDFYRYDHRIIFQHIVRLINGSRPADVITVFEALT
NSGKAEEVGGVSYLNALAQNTPSAANIRRYAEIVRDRGILRKLITVSDEISGQAFNPQGKEVKQMLDEAESKIFAIAEEG
SRGAQGFQEIQPLLTQVVERIDELYNRDSTSDITGVPTGFADLDRMTSGLQPGDLIIVAGRPSMGKTAFSINIGETVAIE
SGLPVAVFSMEMGGTQLAMRMLGSVGRLDQHRLRTGKLADEDWPRLTHAIQKMNDAQLYIDETPALNSIELRARSRRLSR
QCGKLGLIIIDYLQLMSANSSGENRATEISEISRNLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA
DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSVRLTFLGQYTKFENYTGSAALYQGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 1e-104 52
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-93 48
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 3e-94 48
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 1e-94 48
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 7e-90 46
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-93 46
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-89 44
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-89 44
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 2e-77 44