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Name : topB (HEAR1978) Accession : YP_001100248.1 Strain : Herminiimonas arsenicoxydans Genome accession: NC_009138 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 1991363 - 1993195 bp Length : 1833 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2553698, 10574789; Product type e : enzyme DNA sequence : TTGCCCATCATTCCCCAGCATTGGCGGGTCGAGGTCAAACCGAAGACCGCCACGCAATTCAAGGTCGTCAAGGCGCTTCT GGCGAAGGCGACCCAGCTTGTCATCGCCACCGATGCCGACCGCGAAGGCGAGTTGATCGCCCGCGAGATCATCGAACTGT GCGGCTACCGCGGCCCCATCGAGCGGCTGTGGTTGTCGGCACTCAACGATGCGTCCATCCGCGCCGCCCTCGGCAAGCTA CGGCCCTCAGCCGAGACGCTGCCGATGTACCACTCGGCGCTGGCGCGATCCCGTGCGGATTGGCTGGTGGGCATGAACCT CAGTAGGTTGTTCACGGTGCTGGGGCGGCAGGCCGGCTACGACGGCGTGCTGTCGGTCGGCCGCGTCCAGACCCCGACGC TCAAGCTCGTCGTGGACCGCGACCGCGAGATCGCAGCCTTCGTGTCCGTGCCGTACTGGGCCATCGTCGTGTCCCTGTCC GCAGGTGTCCAGGCTTTCACCGCGCACTGGGTTCCACCCAATGCCTGCACCGACGACGCAGGCCGCTGCCTGCAGCAGCC GGTCGCACAGCAGGCCATGCAGCAGATCCGCGCTGCGGGCAGCGCCCACGTAGTGTCGGTTGAGACCGAGCGCGTGCGCG AAGGCCCGCCGCTGCCGTTCGACCTGGGCACCTTGCAGGAGGTGTGTTCAAAGCAGCTCGGGCTGGACGTGCAGGAAACC TTGGAGATCGCCCAGGCCCTGTACGAGACGCACAAGGCCACGACATACCCCCGCTCGGATTCCGGCTACCTGCCCGAGAG CATGTTTGCCGAAGTGACCACCGTTCTCGACAGCCTGCTTAAGACCGATCCCTCGCTGCGCTCGATCATAGGCCAGCTCG ACCGTTTGCAGCGCTCGCGCGCCTGGAACGATGGCAAGGTCACGGCCCACCACGGCATCATCCCGACGCTCGAACCGGCG AACCTCTCCGCCATGAGCGAGAAGGAACTGGCCGTGTACAGGCTCATCCGGGCGCATTACCTAGCGCAGTTCCTCCCTCA CCACGAGTTCGACCATACTGTGGCCAAGCTTTCGTGCGGTGGGCAGAACCTTGCGGCCACGGGCAAGCAGGTTGTCACGC CGGGCTGGCGCCAGGTGCTGGCCGAGCCGCAGTCCGAGGACGGCGATGGCGACGGCGACACCGCGGCCCGCGCCCAGGTG CTACCGGCGCTGCACGAAGGTCTGGCATGTCAGGTGGCCGATATCGATCTGAAGGCACTCAAGACGCTGCCGCCCAAACC GTACACGCAAGGCGAGTTGGTCAAGTCTATGAAAGGCGTCGCCAAGCTGGTGTCCGATCCCCGCCTGAAGCAGAAGCTCA AGGATACGGTCGGCATCGGCACCGAAGCGACCCGGGCCAACATCATCGGCGGCCTGATCGCCCGCGGCTACCTCGTAAAG AAAGGGCGCGCCATCCGCGCCTCGGATGCGGCTTTCACCTTGATCGATGCCGTGCCTGCGGCGATTGCCGACCCCGGCAC CACCGCCGTCTGGGAACAAGCGCTCGACATGATCGAAGCCGGCCAGCTCACGCTGGATGTGTTCATCGGCAAGCAGGCCG CATGGATTTCGCAGTTGATCGCGCAGTACGGCAACGCGTCCCTGTCTATCAAGGCTCCCCAAGGGCCGACATGCCCGCAG TGCGGCGCACCCACGCGCCAGCGCAGCAGCAAGAGCGGCCCGTTTTGGTCGTGCAGTCGCTACCCGGACTGCAAAGGCAC GCTGCCGGTCGAATCCGGCAGCTCCAAGCGCGCCGCCTCGCGCCCGCGCCGTAGCGGCCGCAAAGGCTCCTGA Protein sequence : MPIIPQHWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCGYRGPIERLWLSALNDASIRAALGKL RPSAETLPMYHSALARSRADWLVGMNLSRLFTVLGRQAGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIVVSLS AGVQAFTAHWVPPNACTDDAGRCLQQPVAQQAMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDVQET LEIAQALYETHKATTYPRSDSGYLPESMFAEVTTVLDSLLKTDPSLRSIIGQLDRLQRSRAWNDGKVTAHHGIIPTLEPA NLSAMSEKELAVYRLIRAHYLAQFLPHHEFDHTVAKLSCGGQNLAATGKQVVTPGWRQVLAEPQSEDGDGDGDTAARAQV LPALHEGLACQVADIDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLIARGYLVK KGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQLIAQYGNASLSIKAPQGPTCPQ CGAPTRQRSSKSGPFWSCSRYPDCKGTLPVESGSSKRAASRPRRSGRKGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 95 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 75 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-150 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-145 | 49 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-146 | 48 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 7e-147 | 48 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-146 | 48 |
