Gene Information

Name : fliP (HEAR1887)
Accession : YP_001100162.1
Strain : Herminiimonas arsenicoxydans
Genome accession: NC_009138
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1902608 - 1903366 bp
Length : 759 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGTCCAATAGCACTCTCCCCCTGCTGCGTCGCTGCCTGCCCCTGTTGCTGCTGGTCTTGCCGATGGCAGCCATGGCGCA
GCAAGCCGGCCTGCCCGCACTGACCAGCACGCCGACGCCGGGCGGCGGACAAACCTATTCGCTCAGCCTGCAAACCCTGC
TGCTGCTGACCGGACTGTCGTTTTTGCCGGCCGTGCTGCTGATGATGACCAGTTTTACCCGCATCATCATCGTTCTTTCA
TTACTGCGCCAGGCACTCGGCACCCAGAGTTCGCCACCGAACCAGGTCATCATCGGGCTGTCATTGTTCCTGACCCTGTT
TGTCATGAGCCCGGTGCTGGACAAGATTTACGTCGACGCCTATCAACCCTTCTCCGCCAACAAGATCCAGATGGGTGAAG
CGCTCGACAAGGCAGTGGCACCCTTGAAAACCTTCATGATCAAGCAGACCCGTGAATCCGATCTGGCCCTGTACGTCAAG
ATGTCCAAGGGACCGGAGCTGCAGGGACCGGAAGATATTCCGCTGCGCATACTGGTGCCGGCCTTCATCACCAGCGAACT
GAAAACCGCTTTCCAGATCAGCTTCGCCATCTTCATTCCCTTCCTGATCATCGACATGGTGGTTGCCAGCGTCTTGATGT
CGATGGGGATGATGATGGTATCGCCGGCGATTGTGGCCTTGCCGTTCAAGCTGATGCTGTTCGTCCTGGTCGATGGCTGG
CAATTGCTGATCGGCTCACTGGCGCAAAGTTTTTACTGA

Protein sequence : 
MSNSTLPLLRRCLPLLLLVLPMAAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLS
LLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAPLKTFMIKQTRESDLALYVK
MSKGPELQGPEDIPLRILVPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGW
QLLIGSLAQSFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-26 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001100162.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-65 77
fliP YP_001100162.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-62 71
fliP YP_001100162.1 flagellar biosynthesis protein FliP VFG1259 Protein 7e-53 68
fliP YP_001100162.1 flagellar biosynthesis protein FliP VFG2016 Protein 9e-46 55
fliP YP_001100162.1 flagellar biosynthesis protein FliP VFG0394 Protein 1e-23 41