Gene Information

Name : MmarC5_1312 (MmarC5_1312)
Accession : YP_001097824.1
Strain : Methanococcus maripaludis C5
Genome accession: NC_009135
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 1258533 - 1259846 bp
Length : 1314 bp
Strand : -
Note : PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: oih:OB2931 Vi polysaccharide biosynthesis

DNA sequence : 
ATGATTCAAGAATTATTGTCAAATCAAAAAAAAATCTCAATAACTGGCCTTGGATATGTGGGGCTTCCCCTAGCAGTGGC
ATTTGCTGAAAAAGGAATTAATGTAATAGGTTTTGATGTTAATTCTGAAAAAATAAAGAAATATTTGGAAGGAATAGATC
TTACAAATGAAGTGGGAAATGAGAAACTATCTAATTTAAAAAATATAAAATTCACGTCAAATGAGTCTGATTTGAAAGAT
GCTAAATTCCATATTGTGGCAGTTCCAACTCCTGTGGGTAAAAATAATATTCCAAACTTGACCCCTATCGAGGGCGCAAG
CACGATTTTGGGTAGGAATCTTACAAAAGGTTCTATTGTAGTTTATGAATCAACGGTTTATCCTGGAGTTACTGAAGAGA
TATGTGTACCGATACTTGAAAAAGAATCTGGATTGATATGTGGACGTGATTTTAAAGTTGGTTATTCTCCTGAAAGGATA
AATCCGGGGGATCGAAAAAATACTTTGGAAACCATAGTAAAAATTGTTGCAGGCCAGGATGAAGACTGTTTGAACGTAGT
TGCAGATGTTTATAGAAGTATTATCGATGCAGGAGTACATCGGGCAACATCGATAAAAGTTGCAGAAGCTGCAAAAGTAA
TTGAAAATGCTCAAAGAGATGTAAATATTGCTTTTGTAAACGAACTTTCAATGATATTTGATAAAATGGGGATCGATACG
AAAGAGGTTCTAGAGGCCGCAGGAACAAAATGGAATTTTTTAAACTTCCAACCGGGACTTGTTGGCGGCCACTGTATCGG
TGTAGATCCCTATTATCTAACATATAAATCTGAAGAAGTGGGTCACACCTCGCAATTGATACTTTCGGGAAGGCGAATTA
ACGATAGAATGAGTAAATTTATTGCAGAAAAAACTGTTAAAAAAATGATAGAATCAGGCGTTAGAATAAAAGGTGCAAAA
GTTCTGGTTTTGGGTTTAACGTTTAAAGAAAATGTTCCAGATCTGAGAAATAGCAAAGTTGCAGATTTAATCCACGAATT
AAACGAATATGGATTAGAAATTTTGGTTGTGGATCCTTTAGCAGATTTTGAAGAAGCAAAAAGGGAGTATTCAATAGAAT
TGACTAATTTGGATGACGTAACTAATGTGGATGCCATAATTTTTGCAGTGCCTCACAAAGAATATTTGAAAATAAATATC
GATAAAATGAATGAATTTTATACTGGGGGAATAGATAATCCGGTATTTATTGATATAAAGGGAGTATTCGATAAAAAAGA
AGTAAATGGTAAATTTAACTATTGGAGATTATAG

Protein sequence : 
MIQELLSNQKKISITGLGYVGLPLAVAFAEKGINVIGFDVNSEKIKKYLEGIDLTNEVGNEKLSNLKNIKFTSNESDLKD
AKFHIVAVPTPVGKNNIPNLTPIEGASTILGRNLTKGSIVVYESTVYPGVTEEICVPILEKESGLICGRDFKVGYSPERI
NPGDRKNTLETIVKIVAGQDEDCLNVVADVYRSIIDAGVHRATSIKVAEAAKVIENAQRDVNIAFVNELSMIFDKMGIDT
KEVLEAAGTKWNFLNFQPGLVGGHCIGVDPYYLTYKSEEVGHTSQLILSGRRINDRMSKFIAEKTVKKMIESGVRIKGAK
VLVLGLTFKENVPDLRNSKVADLIHELNEYGLEILVVDPLADFEEAKREYSIELTNLDDVTNVDAIIFAVPHKEYLKINI
DKMNEFYTGGIDNPVFIDIKGVFDKKEVNGKFNYWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-116 58
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 3e-96 51
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 3e-96 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MmarC5_1312 YP_001097824.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 1e-96 51