Gene Information

Name : Shew_0097 (Shew_0097)
Accession : YP_001092228.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 108232 - 108909 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3740 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAAATATTACTGGTAGAAGATGATGCGACCACCACAGAGTATGTGGTCAAGGGATTTGCCGAACAGGGGCACAATAT
CGAAACCGCTAGCGACGGCCATCAGGGCCTGCTGCTGGCCACCAGTATGCAGTATGACCTGGTGATACTGGATCGCATGC
TGCCGCAGCTCGACGGCCTCAAGCTATTGGCGGCGCTGCGCGCGACCGGCAACCAGACACCGGTACTCATCCTGTCGGCG
CTGAGCCATGTGGATGAGCGCGTCAAGGGCCTCAGGGCCGGTGGCGACGACTACATGACCAAGCCTTTTGCCTTCTCCGA
ACTCTTGGTGCGCGCCGAGAAGCTGATGCAGCGTGGTAACTCCGCGCCGGCGCAGACAGAGCTTAAGGTGGGCGAGTTGG
TCATGGAACTGCTGACCCGCAAGGTAACCCTGGCGGGCAGTGAGATCTTGTTGCAACCCAAAGAATTTCAATTGCTCAAG
TACTTGATGGAACACCCGAATCAGGTGATCAGCCGCACCCTCTTGTTCGAGGCGGTGTGGGATTACCATTTCGATCCTCG
CACCAATGTGATCGACGTGCATATCGCTAAGCTGAGACGTAAGTTTGAAGAGCTGGGCTTTGGCGAGCTGATTGAAACGG
TTCGAGGGGCTGGCTATCGCCTCCGTCAAGGGCATTAG

Protein sequence : 
MKILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGLKLLAALRATGNQTPVLILSA
LSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGNSAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLK
YLMEHPNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRLRQGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-41 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-39 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_0097 YP_001092228.1 two component transcriptional regulator BAC0347 Protein 4e-48 47
Shew_0097 YP_001092228.1 two component transcriptional regulator BAC0083 Protein 4e-43 46
Shew_0097 YP_001092228.1 two component transcriptional regulator BAC0111 Protein 9e-49 45
Shew_0097 YP_001092228.1 two component transcriptional regulator BAC0638 Protein 1e-40 45
Shew_0097 YP_001092228.1 two component transcriptional regulator BAC0197 Protein 3e-40 44
Shew_0097 YP_001092228.1 two component transcriptional regulator BAC0308 Protein 5e-42 43
Shew_0097 YP_001092228.1 two component transcriptional regulator BAC0125 Protein 5e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_0097 YP_001092228.1 two component transcriptional regulator VFG0596 Protein 3e-41 45
Shew_0097 YP_001092228.1 two component transcriptional regulator VFG1389 Protein 5e-36 44