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Name : Shew_0392 (Shew_0392) Accession : YP_001092523.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 442454 - 444214 bp Length : 1761 bp Strand : + Note : PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_0469 type II secretion system protein E DNA sequence : GTGAAACCCAAGTTAAAGATGCGCCTCGGCGACTTATTGGTACAGGAAGCGATCATCAGCGAGGCGCAGCTGGGCCAGGC CCTGGCCGAGCAGAGAAATACCGGCAAGAAGCTGGGTCGCACCCTGATCGATCTCTCCTGCATCACAGAAGAGCAGCTGC TTAAGTTTCTGTCGCAGCAGCTTAATATTCCCTTTTTGGATATCAGCCGCCGGGCGATTCCGCCTCAAGTCGTGAATCTT CTACCCGAGGTGCAGGCCCGTCGTTATCGCGCCCTGGCGGTGGAAGATAATGGCGACCATGTGCTGGTGGCCATGAGCGA CCCTGCCGATCTGCAGGCGATGGACAATATCGAGGTCTTGCTGGCGCCCAAGGCGATTAAGATCGCCGTGGTTACCGAGA CCCAGCTGCTGGAGGCCTTCGACAACCTGTATCGCCGCACCGGGGAGATCGCCCAGATCGCCGGTAAGCTGGAGGAGGAA TATGCCGCCGACGATCAGTTCGATCTCGCCAGCCTGACCGATGCCGACAGCGACAACGAGACCACTGTGGTTAAGCTACT GCAGTCGATCTTCGAAGACGCGGTGCAGATGCGCGCCTCAGATATTCATATCGAGCCCGGTGACAAGGTGCTGAGGATCC GCCAGCGTATCGATGGTCAGCTGCAAGAGAATACCCTGCAGGAGGTGAATATCGCCTCGGCACTGGTGCTGCGCCTCAAG TTGATGGCGGGCTTGGATATCTCAGAGAAGCGTCTGCCCCAGGATGGTCGTTTCCACATGGAGATCAAGGGACACAAGAT AGACGTGCGTATGTCGACCATGCCTATCTATCACGGCGAGTCAGTGGTGATGCGTCTGCTGGACCAGTCTGCGGGCTTGC TGACTTTAGATGAGACCGGCATGCCGGCCGAGATGCTGGCGCGGGTGCGCAGACAGATCAAACGCCCCCACGGCATGCTG CTGGTAACCGGGCCTACGGGTAGCGGTAAGACCACGACGCTTTATGGCGTGTTGAGTGAGCTCAACACCGCCGATCGCAA GATCATCACGGTAGAAGATCCGGTGGAGTATCAGCTGCCGCGTATCAATCAGGTACAAGTTAACCATAAGATAGGCTTAG ATTTTTCCAACGTACTGCGTACCACCTTGCGTCAGGACCCCGATATCATCATGGTGGGTGAGATGCGTGACCAGGAAACG GTGGAAATTGGCCTCAGGGGCGCGCTGACAGGTCACTTTGTGCTGTCGACCCTGCATACCAATGATGCGGTCACCTCTGC CCTGCGTCTGCTGGACATGGGCGCCGCCAGCTATCTGGTGGCCAGTGCGCTTAGGGTGATCATCGCTCAGCGTCTGGTGC GCCGGGTCTGTCACAAGTGTGCCCAGCCCTATGATGCTAGCGCCGCCGATCATGCCTGGCTTAGCAGCATAAGTGGTCGC GACTTCAGCCAGGCCAAGTTTCGTATTGGCACCGGCTGTCAGAGCTGTAACGGTAGCGGCTATCGTGGCCGTATCGGTGT GTTCGAGATCCTGGAGCTGGATGAGAAGATGATCGATGCGATGCGTAGCGGCAATCCCCAGGCGTTTGCCCAGGCCGCCT ACCAGAGCCCGAACTTTACTCCGCTGGCCGAGTCGGCGCTCAACTACCTTGCTGAGGGCATGACCACTATGGAAGAGGTG GCCAAGCTTATCGAAGATGCCAGCGATGCCCAGGTACCCATCTCGCAGGAGATGATCCATCAACATGAGATTGAGGGCTA A Protein sequence : MKPKLKMRLGDLLVQEAIISEAQLGQALAEQRNTGKKLGRTLIDLSCITEEQLLKFLSQQLNIPFLDISRRAIPPQVVNL LPEVQARRYRALAVEDNGDHVLVAMSDPADLQAMDNIEVLLAPKAIKIAVVTETQLLEAFDNLYRRTGEIAQIAGKLEEE YAADDQFDLASLTDADSDNETTVVKLLQSIFEDAVQMRASDIHIEPGDKVLRIRQRIDGQLQENTLQEVNIASALVLRLK LMAGLDISEKRLPQDGRFHMEIKGHKIDVRMSTMPIYHGESVVMRLLDQSAGLLTLDETGMPAEMLARVRRQIKRPHGML LVTGPTGSGKTTTLYGVLSELNTADRKIITVEDPVEYQLPRINQVQVNHKIGLDFSNVLRTTLRQDPDIIMVGEMRDQET VEIGLRGALTGHFVLSTLHTNDAVTSALRLLDMGAASYLVASALRVIIAQRLVRRVCHKCAQPYDASAADHAWLSSISGR DFSQAKFRIGTGCQSCNGSGYRGRIGVFEILELDEKMIDAMRSGNPQAFAQAAYQSPNFTPLAESALNYLAEGMTTMEEV AKLIEDASDAQVPISQEMIHQHEIEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-77 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-77 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew_0392 | YP_001092523.1 | type II secretion system protein E | VFG1876 | Protein | 1e-83 | 42 |
