Gene Information

Name : Shew_3682 (Shew_3682)
Accession : YP_001095807.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4386166 - 4387596 bp
Length : 1431 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3966 two component, sigma54 specific, tr

DNA sequence : 
ATGCTAGAATCTGTTCAATATGAGTCAAAATGTCCAAAAGAAGACAATATGAGCCAGCCTAATAAAGAGATGAAGCCCCT
ACCATCCGCCGTATCTGTGCTAATCGTCGACGATGAGCCGGGCATGCGCAGCTTCCTGAAGAAGGCGCTGTCGAAGAAGT
TCGCCCTGGTGGAAACCGCAGGTAGCGTCGAAGATGCCGAGCAGCTCAGGAGCCGCTGTCACTTCGATCTGCTGATCGTC
GATATCCGCCTGCCGGGTCGTTCCGGCATCGAGTGGGACGAGGCGCTGAGCGATCAGGAGCGGCGCTCAGACATCATCTT
CATGACGGGCTATGCCGATATGGACGTGGCCATCAAGGCGCTGCGCGCCGGCGCCTCTGACTTTATTATGAAACCCTTCC
ACCTGGAGCAGATGATGAAGGCGGTTGACCGCTGCATCGAACGTCGCCTGCTCAAGCGCGAAAACCTCATGCTGCGCCGC
GAGGTCTCCATCGGCCAATCCTCCACCATCATAGGCAGCAGCGATGCCATGATGGAGGTGAAACATGTGATCGAGCGGGT
GGCACCCACCAATGCGGTAATTCTGATCGAAGGCGAATCGGGCACGGGTAAGGAGCTGGTGGCCAGACAGCTGCATCTGC
TCAGCGGTCGTCAGGGGCCCTTTGTACCGGTCAACTGTGGCGCCATCGCTCCCGAACTGCTGGAGAGTGAACTCTTCGGT
CATGCGGCTGGTTCCTTCACCGGCGCCAAGGGCAACCGTGAAGGTTTATTCAGCTTCGCCTCGGGCGGCACCATCTTCCT
CGACGAGATAGGCGAGATGCCGCTCAAGATGCAGACGGCTCTGCTTAGGGTGCTGGAGCAGCGCACCATACGCCCCGTGG
GCAGCGAGAAGGAGATCAATATCGATGTCCGGGTGCTGGCGGCCACCAACCGCAAGCTGGCGGATGAGGTGGAGGCCGGT
AACTTCAGGCGTGATCTCTTCTATCGACTCAACGTATTAGACATAGTGATACCCCCGCTGCGGGAGCGCCCCGAAGATGT
GGTGGAGCTGACCCATCACTTCACCCGCCTGTTGGCCGCCGAGCTGGGGGTTAAAGAGGTGGTGTGGAGCCACGAGGATA
TGCTCAAGCTGCAACAGCATGAGTGGCCGGGCAACATCCGTGAGCTGCGCAACATGATAGAGCGCTGTATTTTGCTGGGT
AAGCCACCGGCGGAATATTGGAAACAGCAGCCTAAATCAGAGGCAACCGGCGAGCTGGGTTATCCGCTGGATTGGTCGCT
CAAGGAAGTTGAGAAACACCATGTGACCTCAGTGGTCGACCTGCATCAGGGCAACAAGTCTGCCGCCGCGCGCGATCTAG
GGGTTTCCCGTAAGACACTGGATCGTAAATATAAAGAGTGGTTCGAACTCAATCATCTCGAGGAAGAATAA

Protein sequence : 
MLESVQYESKCPKEDNMSQPNKEMKPLPSAVSVLIVDDEPGMRSFLKKALSKKFALVETAGSVEDAEQLRSRCHFDLLIV
DIRLPGRSGIEWDEALSDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCIERRLLKRENLMLRR
EVSIGQSSTIIGSSDAMMEVKHVIERVAPTNAVILIEGESGTGKELVARQLHLLSGRQGPFVPVNCGAIAPELLESELFG
HAAGSFTGAKGNREGLFSFASGGTIFLDEIGEMPLKMQTALLRVLEQRTIRPVGSEKEINIDVRVLAATNRKLADEVEAG
NFRRDLFYRLNVLDIVIPPLRERPEDVVELTHHFTRLLAAELGVKEVVWSHEDMLKLQQHEWPGNIRELRNMIERCILLG
KPPAEYWKQQPKSEATGELGYPLDWSLKEVEKHHVTSVVDLHQGNKSAAARDLGVSRKTLDRKYKEWFELNHLEEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-60 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-60 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_3682 YP_001095807.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 1e-61 44
Shew_3682 YP_001095807.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 1e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_3682 YP_001095807.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1214 Protein 3e-64 42