Gene Information

Name : Shew_3627 (Shew_3627)
Accession : YP_001095752.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 4326459 - 4326656 bp
Length : 198 bp
Strand : +
Note : PFAM: helix-turn-helix domain protein; KEGG: ccr:CC2232 transcriptional regulator, Cro/CI family

DNA sequence :
ATGAAGAACCGTCTAAAACCCCTGCGCGCCGAGCGCAACTGGACCCAGGCCGACCTGGCGGGACTGCTGGATGTATCACG
CCAGACCATCAATGCCATCGAGAAGGGCAAGTATGATCCCAGCCTGCCACTGGCCTTTAAGATCGCCCGGCTGTTTCAAC
TGCCCATAGAGGCGATCTTCGAGGAAGACGAGGCCTAG

Protein sequence :
MKNRLKPLRAERNWTQADLAGLLDVSRQTINAIEKGKYDPSLPLAFKIARLFQLPIEAIFEEDEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 7e-10 56
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 5e-10 56
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 3e-11 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_3627 YP_001095752.1 XRE family transcriptional regulator VFG2168 Protein 2e-10 56
Shew_3627 YP_001095752.1 XRE family transcriptional regulator VFG2175 Protein 2e-10 56