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Name : Shew_3619 (Shew_3619) Accession : YP_001095744.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 4315828 - 4317951 bp Length : 2124 bp Strand : - Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: shm:Shewmr7_0151 general secretion pathway protein D DNA sequence : ATGAACAACAAGAAAATACGCCGCAATCTTATCGCGAGCGTCGTGATGGGCGCCTCGCTGTTAGCGCCACAAGTGGCGTG GTCGGAACAATACGCGGCTAATTTCAAGGGCACTGACATTCAGGAATTTATCAACATAGTTGGTAAGAACCTGAACCGGA CTATCATCGTCGACCCTACTGTACGCGGCAAGATCAACGTACGCAGTTACGATCTGCTTAACGACGAGCAGTACTATCAA TTCTTCCTTAACGTGTTGCAGGTCTATGGCTACGCCGTAGTCGAGATGGACAACAACATCATCAAGGTGATCAAGGACAA AGACGCCAAGACCTCGGCGATCCGCGTTGCCGACGACAGCACCCCTGGCCTTGGCGATGAGATGGTGACCCGCATTGTCG CGCTCTATAACACAGAGGCCAAACAGCTTGCTCCCTTGCTGCGTCAGCTAAATGACAACGCCGGTGGCGGTAACGTGGTC AACTATGACCCGTCAAACGTCTTGATGATCTCTGGTCGTGCGGCCGTGGTGAACAAGCTGGTGGAAATTGTCCGCCGCGT CGATAAGCAGGGTGATACCGAGGTACAGGTTGTGCCGCTGGAATACGCCTCTGCCGGCGAGATGGTGCGCATTATCGACA CCCTGTATCGCGCCAGCGCCAACCAGTCACAGCTACCGGGTCAGGCGCCTAAGGTGGTTGCCGACGAGCGTACCAACGCC GTAATCGTCAGCGGTGATGAGAAGAGTCGTCAGCGCGTGGTGGCCCTGATTAAGAAGTTAGATGCCGAGCAGGCGACCAC AGGTAATACCAAGGTGCGTTACCTGCGTTATGCCAAGGCCGAAGACTTAGTGGAAGTGCTGACCGGCTTTGCCGAGAAGC TGGCCAAAGATCAGGAGGGCGGTCAGGCCCAGGGTGGTCGCAGCAAGCGCCGCAACGAAATTAATATCATGGCCCACCCA GACACCAACGCACTGGTGATCAGCGCCGAGCCAGATCAGATGCGCACCCTTGAGAGCGTCATCAACCAGTTAGATATACG CCGCGCGCAAGTATTGGTGGAAGCCATTATCGTCGAGGTCGCCGAGGGTGACGATGTCGGCTTTGGCGTGCAGTGGGCCA CAGAGGCCGGTGGCGGTACTCAGTTTAATAATCTAGGCCCCACTATCGGCGAGATCGGTGCCGGTATCTGGGCGGCGCAA GATGAGAAGGCAAGTAATAGCTGTACCGGCTCTGGTGATAACCTGACCTGTACCGATAATCCGGACAAGAAGGGTGACAT CACCCTGCTGGCCCAGGCGCTGGGCAAGGTCAACGGTATGGCATGGGGCGTGGCTATGGGTGACTTCGGCGCCCTGATCC AAGCGGTATCGAGTGATACCAAGTCGAACGTGCTGGCAACCCCTTCTATCACTACCCTGGATAACCAGGAAGCCTCCTTC ATCGTGGGTGATGAGGTGCCGGTACTGACAGGCAGCCAGAACTCTAGCAATGGTAACAGCAACCCCTTCCAGACGGTTGA GCGTAAGGAGGTGGGCGTGAAGTTAAAGGTGGTGCCACAGATTAACGAAGGCACTACGGTTAAGCTCACCATCGAGCAGG AAGTCTCAGGCATCAACGGGAAGACAGGGGTCGATGTGACCTTCGCGACCCGTCGCCTGACCACTACCGTGATGGCCGAT TCAGGCCAGATAGTGGTGCTGGGTGGTCTGATCAACGAAGAGGTGCAGGAGAGCGTGCAGAAGGTGCCTTTCCTCGGTGA CATCCCTATTTTAGGTCACCTGTTTAAGTCCTCTTCTAGCGGTAAGAAGAAGAAAAACCTCATGGTCTTCATCAAGCCGA CCATCATACGCGATGGCGTGACCATGGAAGGCATTGCCGGTCGTAAGTACAACTACTTCCGTGCCCTGCAGCTCGAGCAG CAGGAACGTGGCGTGAACCTGATGCCAAATACCAGCGTGCCTATCCTGGAAGAGTGGAATCAGGCAGAGTACCTGCCGCC TGAAGTTAACGAAGTGCTGCAGCGTTATAAGGATCGCAAGGGGTTAGACACCAAGATGCGTGAAACCGATCCTGCGCTGA AACAGATCAACGAAAACAAGCAGCAAGATAAGCAAGATGAGTGA Protein sequence : MNNKKIRRNLIASVVMGASLLAPQVAWSEQYAANFKGTDIQEFINIVGKNLNRTIIVDPTVRGKINVRSYDLLNDEQYYQ FFLNVLQVYGYAVVEMDNNIIKVIKDKDAKTSAIRVADDSTPGLGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVLMISGRAAVVNKLVEIVRRVDKQGDTEVQVVPLEYASAGEMVRIIDTLYRASANQSQLPGQAPKVVADERTNA VIVSGDEKSRQRVVALIKKLDAEQATTGNTKVRYLRYAKAEDLVEVLTGFAEKLAKDQEGGQAQGGRSKRRNEINIMAHP DTNALVISAEPDQMRTLESVINQLDIRRAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGIWAAQ DEKASNSCTGSGDNLTCTDNPDKKGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTKSNVLATPSITTLDNQEASF IVGDEVPVLTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQINEGTTVKLTIEQEVSGINGKTGVDVTFATRRLTTTVMAD SGQIVVLGGLINEEVQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMVFIKPTIIRDGVTMEGIAGRKYNYFRALQLEQ QERGVNLMPNTSVPILEEWNQAEYLPPEVNEVLQRYKDRKGLDTKMRETDPALKQINENKQQDKQDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-140 | 51 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 2e-148 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew_3619 | YP_001095744.1 | general secretion pathway protein D | VFG2047 | Protein | 6e-139 | 51 |
