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Name : Shew_3618 (Shew_3618) Accession : YP_001095743.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4314264 - 4315835 bp Length : 1572 bp Strand : - Note : KEGG: shm:Shewmr7_0152 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGAGTGATATCCAAGCCACGCAAAACGAGGAACTGGCCCAGGTAACGAGTGAACTCGGGCTAGCCTCGGAGGCCGAATC CGACGAGGTCTTTCACTCAAGCAGCCGGGATCGTCTGCCCTTCGCCTTCGCCCACAGATTCGAGTTGGTGCTGGAGAAGG ACGACGAAGCCGGATTAACCCTGTACCACACAGTCAACACGCCTATCGACGCTATGTTGGAGGTGCGCCGTTACACAGGA AAAGAGCTGGCACTGGCGCAGCTGGAGCCCTCTGTGTTCGAGGCCAAGCTGACTCAGGTCTATCAGGCCAACTCTTCCGA GGCACAGCAGCTGATGGAAGATATCGGCAACGAGATGGATCTGTTTACTCTGGCCGAGGAGCTGCCACAGACAGAGGATC TGCTTGAGGGTGACGACGATGCACCTATCATCAAGCTGATCAACGCGCTCCTGTCCGAGGCGATCAAAGAGGAAGCCTCG GATATCCATATCGAGACCTACGAGAAGCAGCTGGTGGTGCGTTTCCGCGTCGACGGCGTGCTCAAAGAGGTGCTCAAGCC CAATCGTAAGCTCTCCTCGCTATTGGTTTCGCGTATCAAGGTAATGGCGCGTCTGGATATCGCCGAGAAGCGGGTGCCGC AAGATGGCCGCATCTCGCTGCGTATCGCAGGTCGAGCGGTGGACGTGCGTGTCTCGACCATGCCTTCCAGCCACGGCGAG CGCGTGGTGCTGCGTCTGCTGGATAAGAATGCCGGCAACCTGGATCTTAAACAGCTGGGGATGACAGATGAGATACGTCA TCAGTTCGACGAACTGATCCGTAAGCCCCATGGCATCATCCTGGTTACAGGTCCTACGGGCTCGGGTAAGAGTACCACAC TGTATGCGGGTCTGACCGAGATCAACGCCATCGACACTAACATTCTGACGGTCGAAGACCCGATAGAATATGAACTGCCC GGCATAGGCCAGACCCAGGTCAATACCAAGGTCGACATGACCTTCGCCCGTGGCCTGAGGGCCATACTGCGTCAAGACCC GGATGTGGTGATGATAGGTGAGATCCGTGATCTGGAAACCGCGCAGATCGCGGTGCAGGCCTCGCTCACGGGTCACTTGG TTATCTCTACCCTGCATACCAATACCGCCTCGGGCGCTATCACGCGTCTGCAGGACATGGGCGTCGAGCCCTTCCTGGTA TCCTCGAGTCTGCTCGGGGTGCTGGCGCAGCGCCTGATCCGTACCCTGTGCCCTAGCTGTAAGACAGAGCACACGCCGGA CCTGCGTGAGCGCGAGCTGCTCGGGATCAGCGAAGACGATCCACGCACCATCTACCGGGCGACAGGTTGTTCGGCCTGTG GCCACAACGGCTACCGTGGCCGTACCGGTATCCACGAGCTGCTGCTGGTAGACGACTATGTACGCGAGCTTATCCACACA GGACGCGGCGAGCTGGCCATTGAGAAGCATATTCGTAAGACGGTACCTAGCATTCGCCATGACGGCATGATCAAAGTCCT CGCCGGGGTGACTACGCTGGAAGAAGTGCTGCGCGTCACTCGCGAGGAGTAG Protein sequence : MSDIQATQNEELAQVTSELGLASEAESDEVFHSSSRDRLPFAFAHRFELVLEKDDEAGLTLYHTVNTPIDAMLEVRRYTG KELALAQLEPSVFEAKLTQVYQANSSEAQQLMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEAS DIHIETYEKQLVVRFRVDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGE RVVLRLLDKNAGNLDLKQLGMTDEIRHQFDELIRKPHGIILVTGPTGSGKSTTLYAGLTEINAIDTNILTVEDPIEYELP GIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLV SSSLLGVLAQRLIRTLCPSCKTEHTPDLRERELLGISEDDPRTIYRATGCSACGHNGYRGRTGIHELLLVDDYVRELIHT GRGELAIEKHIRKTVPSIRHDGMIKVLAGVTTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-154 | 66 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-155 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew_3618 | YP_001095743.1 | general secretory pathway protein E | VFG0182 | Protein | 4e-151 | 68 |
| Shew_3618 | YP_001095743.1 | general secretory pathway protein E | VFG2048 | Protein | 1e-154 | 65 |
| Shew_3618 | YP_001095743.1 | general secretory pathway protein E | VFG1876 | Protein | 4e-140 | 59 |
| Shew_3618 | YP_001095743.1 | general secretory pathway protein E | VFG2426 | Protein | 4e-79 | 46 |
| Shew_3618 | YP_001095743.1 | general secretory pathway protein E | VFG0233 | Protein | 3e-86 | 46 |
