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Name : Shew_3617 (Shew_3617) Accession : YP_001095742.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 4313041 - 4314261 bp Length : 1221 bp Strand : - Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: sfr:Sfri_0107 general secretion pathway protein F DNA sequence : ATGCCAGCATTTGAGTACAAGGCGTTAAACGCCCAGGGCAAACAGCAGAAAGGGGTTGTCGAGGCCGACACGGCTCGTCA TGCCAGGGGGCAACTGCGCGAGCTGCGTCTGATGCCGCTGGAGATCACCCCAGTGGTCGAGAAGGAAGCCAAGGCAAAGA GCGGTGGTTTCAGCTTCAAGCGCGGCATCTCGGTCGCCGAGCTGGCACTGATCACCCGGCAGATCGCCACCCTGGTGGCC GCCGGCCTGCCGGTGGAAGAGGCCCTCAAGGCCGTGGGGCAACAGTGTGAAAAGGATCGTCTCGCCAGCATGGTGATGGC GGTGCGCTCTCGCGTTGTCGAGGGTTACAGCCTGGCCGATTCCATGGCCGAATTTCCCCATATCTTCGACGATCTCTACC GGGCCATGGTTGCCTCGGGTGAGAAATCGGGCCATCTCGAGGTGGTGCTCAACCGCCTCGCCGACTATACCGAGCGTCGT CAGCAGTTAAAGACCAAGATGACCCAGGCGATGATCTATCCCATCGTTTTGACCCTGGTCGCCATCAGTGTGATCGCCAT CCTGCTGGCCGCCGTGGTGCCTCAGGTGGTGGGTCAGTTCGAGCATATGGGCCAGGAACTGCCCTGGACGACACAGTTTT TGATCGCCTCATCGGATTTTGTTCGCGACTATGGCCTGATCGTCATAGGCGTCATCATCGCCTTAGTGGTGGGTGCCAAG CAGCTGCTGCGCAGCGCGGCCAACCGGATGAAGTACGATAGCGCAATATTAAAGATGCCGGTTGTCGGCCGGGTAAGTAA GGGCTTGAATACGGCGCGTTTTGCACGCACCCTGAGTATCCTTACTGCCAGTTCGGTTCCTCTGCTCGATGCCATGCGTA TCGCCAGCGAGGTCTTGATGAATGTCCGGGTACGGGCGGCGGTCGAGGAGGCCACGGCCAGGGTACGTGAAGGGACTAGC CTAGGCGCGGCGCTTGCCAATACTAAACTTTTTCCCCCAATGATGCTCTATATGATCACCTCGGGTGAAAAGAGTGGTCA GCTGGAGCAGATGCTTGAGCGCGCCGCCGACAACCAAGACAGAGAATTTGAGTCTAACGTCAACATCGCCCTTGGGGTGT TCGAGCCCATGCTGGTGGTCAGCATGGCGGCCGTGGTGCTGTTTATCGTCCTGGCGATTCTGCAGCCGATCTTAGAACTC AACAACATGATTAGTGGTTAA Protein sequence : MPAFEYKALNAQGKQQKGVVEADTARHARGQLRELRLMPLEITPVVEKEAKAKSGGFSFKRGISVAELALITRQIATLVA AGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERR QQLKTKMTQAMIYPIVLTLVAISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVVGAK QLLRSAANRMKYDSAILKMPVVGRVSKGLNTARFARTLSILTASSVPLLDAMRIASEVLMNVRVRAAVEEATARVREGTS LGAALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQDREFESNVNIALGVFEPMLVVSMAAVVLFIVLAILQPILEL NNMISG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 6e-84 | 55 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-83 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew_3617 | YP_001095742.1 | general secretion pathway protein F | VFG2049 | Protein | 1e-80 | 55 |
| Shew_3617 | YP_001095742.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-79 | 49 |
| Shew_3617 | YP_001095742.1 | general secretion pathway protein F | VFG1870 | Protein | 7e-69 | 44 |
