Gene Information

Name : Shew_3616 (Shew_3616)
Accession : YP_001095741.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : general secretion pathway protein G
Function : -
COG functional category : N : Cell motility
COG ID : COG2165
EC number : -
Position : 4312535 - 4312969 bp
Length : 435 bp
Strand : -
Note : TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: shm:Shewmr7_0154 general secretion pathway protein G

DNA sequence : 
ATGCAAGCAAGAAACAAGCAAAAAGGTTTTACCCTACTGGAAGTTATGGTGGTTATCGTTATCTTAGGGATCCTTGCTTC
TATGGTTGTGCCTAACCTTATGGGCAACAAAGATAAAGCCGACATCCAAAAGGCGGTATCTGACATTGTTGCACTGGAAA
ATGCCTTGGACATGTATCGCTTGGACAACAGCGTCTATCCGACAACAGAGCAGGGCCTCGAAGCCCTGGTACAGAAGCCG
ACTATCTCACCCGAGCCCCGTAACTACCGCGCCGACGGCTATGTGAAGCGTCTGCCACAGGATCCATGGCGTAACGATTA
CCTGCTATTGAGCCCAGGCGAGCAGGGTAAGATCGACATCTTCAGTGCCGGTCCTGACGGTCAACCGGGTACCGAAGACG
ATATCGGTAACTGGAATCTACAAGATTTCCAATAA

Protein sequence : 
MQARNKQKGFTLLEVMVVIVILGILASMVVPNLMGNKDKADIQKAVSDIVALENALDMYRLDNSVYPTTEQGLEALVQKP
TISPEPRNYRADGYVKRLPQDPWRNDYLLLSPGEQGKIDIFSAGPDGQPGTEDDIGNWNLQDFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-45 69
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 6e-45 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_3616 YP_001095741.1 general secretion pathway protein G VFG2050 Protein 1e-45 69
Shew_3616 YP_001095741.1 general secretion pathway protein G VFG1871 Protein 2e-34 56
Shew_3616 YP_001095741.1 general secretion pathway protein G VFG0180 Protein 4e-34 56