Gene Information

Name : Shew_3574 (Shew_3574)
Accession : YP_001095699.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.3
Position : 4269448 - 4270968 bp
Length : 1521 bp
Strand : +
Note : PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3772 aldehyde dehydrogenase (NAD(+))

DNA sequence : 
ATGATCTACAGCAAGCCAGGCACGACAGATGCCATAGTTAACTTCAACAGCCGTTACGACAACTTCATTGGAGGACAGTG
GGTCGCGCCTGTGGGCGGGGAATATTTCGATAACCGCTCACCCGTCGACGGCCAGGTGTTTTGTCAGGTGGCCCGCTCGG
ACGAGCGTGATATCGAGCTGGCGCTGGACGCCGCCCACGCCGCCAAGGATGCCTGGGGCAAGACCTCGGTGACCGAACGC
TCCAACTTACTGCTGAAGATCGCCGATCGCGTCGAGCAAAATCTGGAATTTCTGGCCGTGGCCGAGACCTGGGAAAACGG
TAAGGCGGTACGCGAAACCCTGAATGCGGATCTGCCGCTGTTTGTGGATCACTTCCGCTACTTCGCCGGTTGTATCCGCG
CCCAGGAAGGCAGCGCCGCCGATATCGACAACAACACCGTCAGCTACCACTTCCCCGAGCCGCTGGGCGTCGTCGGCCAG
ATCATCCCCTGGAACTTCCCGCTGCTGATGGCCGCCTGGAAAATCGCCCCGGCGCTGGCCGCCGGTAACTGCATAGTGCT
CAAGCCCGCCGAGCAGACACCCGTCTCCATCCTGGTGATGGTCGAACTCATTCAGGATCTGCTGCCCGCCGGCGTGCTCA
ATATCGTCAATGGTTTCGGCACCGAGGCGGGTCAGGCACTGGCGGTCAGCAAGCGCATCGCCAAACTGGCCTTTACCGGT
TCGACTCAGATTGGCCACCATATCCTCAAGTGCGCCGCCGAGTCGCTGATCCCCTCAACCGTAGAGCTGGGAGGTAAGTC
ACCCAACATCTACTTTGCCGATGTGATGGAACAGGAAGATGAATATCTGGATAAGGCAGTTGAAGGCATGCTGCTGGCCT
TCTTCAACCAGGGCGAGGTCTGTACCTGTCCGTCACGGGTACTGATCGCCGAGTCCATCTACGACAAGTTTATAGACAAG
GTGATCGCCCGCGCCAAGACGATCAAGCAGGGCAACCCGCTGGATACCGACACCCAGGTAGGTGCCCAGGCCTCCCAGGA
GCAGTTCGATAAGATCCTGAGTTACTTGGAGATAGGTCGCAATGAGGGTGCCGAGGTGCTAATTGGTGGTACCAGCTGTC
AGCTATCTGGCGATCAGAGCAGCGGCTTCTATATCGAACCCACCATACTCAAGGGCCACAACAAGATGCGCGTCTTCCAG
GAGGAGATCTTCGGCCCGGTTATTTCGGTCACCACCTTCAAAGATGAGGCCGAGGCTTTGGCCATCGCCAACGACACCGA
GTATGGCCTGGGCGCCGGCGTCTGGACCCGCGACATGAACCGCGCCCAGCGCATGGGACGTGGCATTCAGGCGGGACGCG
TGTGGATCAACTGCTACCACGCCTACCCAGCCCACGCCGCCTTCGGTGGCTACAAGAAGTCAGGCATAGGTCGCGAGACC
CACAAGATGATGCTCAGCCACTACCAGAACACCAAGAACCTGCTCGTCAGCTACGACGTCAACCCGCTGGGATTCTTCTA
A

Protein sequence : 
MIYSKPGTTDAIVNFNSRYDNFIGGQWVAPVGGEYFDNRSPVDGQVFCQVARSDERDIELALDAAHAAKDAWGKTSVTER
SNLLLKIADRVEQNLEFLAVAETWENGKAVRETLNADLPLFVDHFRYFAGCIRAQEGSAADIDNNTVSYHFPEPLGVVGQ
IIPWNFPLLMAAWKIAPALAAGNCIVLKPAEQTPVSILVMVELIQDLLPAGVLNIVNGFGTEAGQALAVSKRIAKLAFTG
STQIGHHILKCAAESLIPSTVELGGKSPNIYFADVMEQEDEYLDKAVEGMLLAFFNQGEVCTCPSRVLIAESIYDKFIDK
VIARAKTIKQGNPLDTDTQVGAQASQEQFDKILSYLEIGRNEGAEVLIGGTSCQLSGDQSSGFYIEPTILKGHNKMRVFQ
EEIFGPVISVTTFKDEAEALAIANDTEYGLGAGVWTRDMNRAQRMGRGIQAGRVWINCYHAYPAHAAFGGYKKSGIGRET
HKMMLSHYQNTKNLLVSYDVNPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-170 70
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 1e-179 69
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 1e-179 69
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 1e-179 69
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 8e-179 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_3574 YP_001095699.1 aldehyde dehydrogenase VFG0082 Protein 7e-171 70