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Name : rph (Shew_3488) Accession : YP_001095613.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : ribonuclease PH Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0689 EC number : 2.7.7.56 Position : 4173696 - 4174409 bp Length : 714 bp Strand : - Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs DNA sequence : ATGCGCCCAAGTGACAGAACCCCAGCTCAATCTCGTCCGGTAACCATTACGCGACAGTTCACTGCCCATGCAGAAGGTTC TGTATTAATCGAATTTGGCGAAACTAAGGTGCTGTGCACCGCGAGCTTCACCGAAGGGGTGCCACGCTTCCTGAAAGGTC AGGGCCAAGGTTGGGTAACCGCCGAATATGGCATGTTGCCACGCTCGACCCACAGCCGTATGGATCGCGAGGCTGCCCGT GGTAAGCAGTCTGGCCGTACCCAGGAGATCCAGCGTCTAATCGGCCGCGCTCTACGCGCAGCGGTAGACATGAAGGCACT GGGTGAAAACACTATCGTGATCGACTGTGACGTGATTCAGGCCGATGGTGGTACCCGCACCGCTGCCATTACCGGTGCCT GTGTAGCCCTGGTTGATGCGCTCAACTGGGCTCGTGGTAAGGGACTGATTAAGACCAACCCACTTAAGTTTTTGATTGCC GCCGTCAGCGTAGGCATCTACAAGGGTGAGCCTATCTGCGATCTTGAGTATGTGGAAGATAGCGCCGCCGAGACCGACAT GAACGTGGTGATGACAGAAACCGGTAAGATCATCGAGATCCAGGGCACTGCCGAGGGTGAACCCTTTAGTCATGAAGAGC TACTCAGCTTGCTGGATCTGGCCAAGCACGGCATTCGCGAGATCGTCGATGTGCAGAAGGCGGCATTGAGTTAA Protein sequence : MRPSDRTPAQSRPVTITRQFTAHAEGSVLIEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRSTHSRMDREAAR GKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDCDVIQADGGTRTAAITGACVALVDALNWARGKGLIKTNPLKFLIA AVSVGIYKGEPICDLEYVEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQKAALS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rph | YP_001800860.1 | ribonuclease PH | Not tested | Not named | Protein | 2e-63 | 58 |
