Gene Information

Name : Shew_3419 (Shew_3419)
Accession : YP_001095544.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4074739 - 4075467 bp
Length : 729 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0485 two component transcriptional regulator, winged helix family protein

DNA sequence : 
ATGTCTGTGATAAACGGTGACTGGACGCTAGGTGAAGGGCGTCGCATCTTGCTGGTCGAGGATGAGCCAGACCTCGCCCG
CCTGATCCGTCTCAACCTGGAATCTCTGCAACATGAGGTGACCCAGGTCAACACTTTGAACCAAGCCAGGCAACAGCTGC
GCAGCAAGTGTTTCGATCTCCTGCTGCTGGATCGCATGCTGAGCGACGGCGATGGCCTGACCCTGTGCCAGCAGCTGCGT
CAGGAGGGCAAGAGCCTGCCCTGCATGATGATCACCGCCAGAGACAGCGAGGCAGATATCGTCCTCGGCCTGGAGTCAGG
CGCCGACGACTATCTGGTCAAACCCTTCAGCGTGTTGGAACTCAGGGCCAGGGTCAAGGCGCTGCTCAGACGCTCCGCTC
AGCAGGCAGCCGACCAGTATGCCCTCACCTTCGACGAGCTGGTGATCGACAGCAAGACGCGTGAGGTCACCGCCGCCAAT
CAGCCCCTGGCTCTCACCGCCAGGGAGTTCGATCTCCTCTACTACCTGGCCCAACACCCACGTCAGGTATTCAGCCGCAT
GCAGCTGCTGGAAGCCGTGTGGGGATACTCCTATGCGGGTTACGAACACACGGTCAACAGCCACATCAATCGCCTCAGGG
CCAAGCTGGCCTGCTGTCCCAGCAGCAACGAGCTGGTGCAGACGGTATGGGGCGTGGGCTATAAGTTCGCCCCACCGGCG
GCGCACTAG

Protein sequence : 
MSVINGDWTLGEGRRILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSDGDGLTLCQQLR
QEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSAQQAADQYALTFDELVIDSKTREVTAAN
QPLALTAREFDLLYYLAQHPRQVFSRMQLLEAVWGYSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYKFAPPA
AH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 8e-45 47
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-45 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_3419 YP_001095544.1 two component transcriptional regulator AE000516.2.gene3505. Protein 1e-35 43
Shew_3419 YP_001095544.1 two component transcriptional regulator HE999704.1.gene1528. Protein 6e-28 42
Shew_3419 YP_001095544.1 two component transcriptional regulator CP001918.1.gene5135. Protein 3e-23 42
Shew_3419 YP_001095544.1 two component transcriptional regulator AE015929.1.gene1106. Protein 9e-31 41
Shew_3419 YP_001095544.1 two component transcriptional regulator NC_012469.1.7685629. Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_3419 YP_001095544.1 two component transcriptional regulator VFG1563 Protein 4e-45 47
Shew_3419 YP_001095544.1 two component transcriptional regulator VFG1702 Protein 2e-45 47
Shew_3419 YP_001095544.1 two component transcriptional regulator VFG1389 Protein 6e-27 42