|
Name : Shew_3306 (Shew_3306) Accession : YP_001095431.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : KpsF/GutQ family protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 3948114 - 3949091 bp Length : 978 bp Strand : + Note : KEGG: shm:Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) DNA sequence : ATGGTAGATGCAGATCAATTACGTCAATGGGGACGCAAGGTTATCGATACCGAGCGCAACGCGCTGGACAACCTGTATCA ATATGTCGACTCGAGTGAATTTGCCAAGGCCTGCCAACTGATCCTCGCCTGCACCGGCAAGGTGATCGTGATGGGCATGG GCAAATCCGGCCACATAGGTAACAAGATCTCGGCCACCCTGGCCAGCACAGGCACCCCAGCCTTCTTCGTCCACCCCGGC GAGGCCAGCCATGGCGACCTGGGCGTACTGAGCGAGAACGATATCGTACTCGCCATCTCCAACTCGGGCGAGGCCAGCGA AATTTTAACCCTGATGCCTGTGATCAAGCGTATGGGGCTGCCCGTCATCGCGGTGACGGGCAAGCCTGAGTCCAACATGG CCAAGCATTCGGTCGTTCATCTGTGTATCGAGGTACCGGAAGAAGCCTGCCCGCTCGGACTGGCGCCCACTTCGAGCACC ACGGCGACACTCGTCATGGGCGATGCCCTGGCGGTGGCCCTGCTGCAGGCCAGAGGCTTCACCAAAGATGATTTCGCCCT CTCCCACCCCGGTGGCAGCCTGGGACGCAAGCTGCTGCTCAAGGTGAGCGACGTGATGCACAAGGGTGACGACTTGCCTC TGGTGGCAGAAGATATCTGCATCACTGAGGCCCTATATGAGATCTCCAAGAAGGGGCTCGGCATGACAGGCGTAGTCAAC AGCCAGGGCATGCTGGTGGGTATCTTCACCGACGGCGACCTGCGCCGGGTGATCGACGCCGAGATCAACCTGCGCAAGAC CTCCATCTCAGAGGTAATGACCCATGGCTGCGTCACCGTTAGCGAAGGCATCTTAGCCGCCCAGGCCCTCAAGGTGATGG ACGAGAAGGAGATCAACGGCCTGATTGTCACCGACGAGCAGCAGAAGCCGATTGGTGCGCTCAATATGCTGGACATGGTC AAGGCGGGGGTGATCTAA Protein sequence : MVDADQLRQWGRKVIDTERNALDNLYQYVDSSEFAKACQLILACTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG EASHGDLGVLSENDIVLAISNSGEASEILTLMPVIKRMGLPVIAVTGKPESNMAKHSVVHLCIEVPEEACPLGLAPTSST TATLVMGDALAVALLQARGFTKDDFALSHPGGSLGRKLLLKVSDVMHKGDDLPLVAEDICITEALYEISKKGLGMTGVVN SQGMLVGIFTDGDLRRVIDAEINLRKTSISEVMTHGCVTVSEGILAAQALKVMDEKEINGLIVTDEQQKPIGALNMLDMV KAGVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 3e-57 | 43 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 2e-57 | 43 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 6e-57 | 43 |
