|
Name : Shew_3278 (Shew_3278) Accession : YP_001095403.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 3921215 - 3922621 bp Length : 1407 bp Strand : - Note : KEGG: shm:Shewmr7_0692 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase DNA sequence : ATGTCACAGCAAGGTGGATTTCAGGCTAAGAAAAAGCCTAGAGATATACAGATCGATGCATTGAAGATGCCGCCCCATTC GATTGAGGCCGAGCAGTCTGTGCTCGGTGGCTTGATGTTGGATTCAGATGCCTGGGATAAGGTGGCCGAGGCCGTGGTGA AGGATGACTTCTACTCCCGCTCCCACAAGATGATCTTTACCGCCATGGAGGCCCTGGTGGCCGCGGGTCAGCCGATCGAT CTGATCACCGTCTCCGAACAGCTTGAGCTGGAAGACAACTTAGAAGATGCCGGTGGTTTCGCCTATTTGGGCGAGATCGC CAAGAACACCCCGAGCGCGGGCAACATTCTCTCCTACGCCGCCATCGTGCGCGAGCGCGCCGTGGTGCGTGAGATGATCA AGGTAGCCAACGAGATCGCCGATGCCGGCTTTAACCCCGAGGGGCGTAACTCCAGCGAACTGCTGGATCTGGCCGAGAGC AAGGTATTTAAGATCGCCGAGCAGCGCGCTAACGCCAACGAGGGCCCCGAGGGGATCAAGACCATCCTCGAGAAGACGGT GGATAAGATCGAGGAGCTGTACAATAACCCTCACAACGGTGTGACCGGGGTGTCCAGCGGCTTCAACGATCTCGACCGCA TGACCGCGGGTTTCCAGTCGGGCGACTTGATTATCGTCGCGGCGCGTCCCTCTATGGGTAAGACCACCTTCGCCATGAAC CTGTGTGAACAGGCGGCGCTGCACGAAGACAAGCCAGTGCTCATCTTCAGCTTGGAGATGCCCTCGGAGCAGATCATGAT GCGTATGCTGGCTTCTCTGGGCCGGGTGGATCAGACCAAGATACGTACGGGTCAGCTCGACGATGACGATTGGGCGCGTG TCTCCTCCACCATGGGGATCATGCTGGAGCAGGGCAAGATGTATATCGACGATGGCTCGGGCCTGACACCGACCGAGGTG CGCAGCCGCGCCAGACGTATCGCCCGCGAATATGGCGGTCTGTCGATGATCATGATCGATTACCTTCAGCTGATGCAGGT ACCCGCTCTGTCCGATAACCGTACCCTGGAGATCGCCGAGATCTCCCGCTCGCTCAAGGCGCTGGCGAAAGAACTCGAGA TCCCGGTGATCGCCCTGTCGCAGCTCAACCGCTCTCTGGAGCAACGCGCCGACAAGCGCCCGGTAAACTCCGACTTGCGT GAATCTGGCTCTATTGAGCAGGATGCGGATTTGATCATGTTTATTTATCGTGATGAGGTGTATAACGACGACTCCGAAGA TAAGGGCACCGCGGAGATCATCATAGGTAAGCAGCGTAACGGCCCCATCGGCCGGGTACGTTTGACCTTCCAGGGCCAGT TCTCCCGTTTCGATAACTACGCCGGTCCGCAGTTCGAAGAAGATTAA Protein sequence : MSQQGGFQAKKKPRDIQIDALKMPPHSIEAEQSVLGGLMLDSDAWDKVAEAVVKDDFYSRSHKMIFTAMEALVAAGQPID LITVSEQLELEDNLEDAGGFAYLGEIAKNTPSAGNILSYAAIVRERAVVREMIKVANEIADAGFNPEGRNSSELLDLAES KVFKIAEQRANANEGPEGIKTILEKTVDKIEELYNNPHNGVTGVSSGFNDLDRMTAGFQSGDLIIVAARPSMGKTTFAMN LCEQAALHEDKPVLIFSLEMPSEQIMMRMLASLGRVDQTKIRTGQLDDDDWARVSSTMGIMLEQGKMYIDDGSGLTPTEV RSRARRIAREYGGLSMIMIDYLQLMQVPALSDNRTLEIAEISRSLKALAKELEIPVIALSQLNRSLEQRADKRPVNSDLR ESGSIEQDADLIMFIYRDEVYNDDSEDKGTAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAGPQFEED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 1e-99 | 51 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 4e-105 | 51 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 6e-103 | 51 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 5e-103 | 51 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 2e-102 | 49 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 6e-94 | 49 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 6e-94 | 49 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 2e-87 | 47 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 5e-82 | 45 |
