|
Name : Shew_3258 (Shew_3258) Accession : YP_001095383.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : two component heavy metal response transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 3895743 - 3896459 bp Length : 717 bp Strand : + Note : TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pha:PSHAb0012 transcriptional activator of copper resistance (two-component regulatory system with CusS) DNA sequence : ATGCAAATCGGCTTAAACAAGTTAAAGGCTTGCAGGCAAATGCGAATATTAGTGATCGAAGACGAGATCAAGATAGGCGA CTATCTCAAGAAGGGATTGGAAGAAGCCGGATATACCATCAGCCTGTGTCGCAATGGCTTGGATGGCTATCACTGCGCCA TCTCTGAACATTTTGATCTTATTATTCTCGATGTGATGCTACCCGACATGAACGGGTGGCAAATCCTCGAAAAAATCCGC CTCAACAATTCAGATATCCCGGTCATGTTCCTGACCGCGAAGGACAGCCTGGAAGACAAGATCAACGGGCTCGAATCCGG CGCCGATGACTACCTGGTAAAGCCCTTTGCCTTTGCCGAACTGCTGGCACGTGTAAAAACCCTATTACGCAGAGGCACGA AACAGCTCCAGTCTGACACCCTAACCCTTCATGGGTTAAAACTGGATATAACAAAACGCCGGGCCAGCCGGGAACAAACG AAACTGCATCTCACCAATAAGGAGTTTTCCCTACTCGAGTTATTGGTACGCCATCAGGGTGAAGTGCTCACCCGCTCTTT CATCGCATCTCAGGTATGGGACATGAATTTCGATAGCGACACCAATGTGATCGATGTCGCCATCAGGCGCCTAAGGGCCA AGGTTGACGATCCCTTCTCGGTAAAGCTTATCCATACCGTACGCGGCATGGGATATAAACTGGACACGGAAGCCTGA Protein sequence : MQIGLNKLKACRQMRILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGWQILEKIR LNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGTKQLQSDTLTLHGLKLDITKRRASREQT KLHLTNKEFSLLELLVRHQGEVLTRSFIASQVWDMNFDSDTNVIDVAIRRLRAKVDDPFSVKLIHTVRGMGYKLDTEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| copR | NP_460069.2 | transcriptional regulatory protein YedW | Not tested | SPI-5 | Protein | 5e-56 | 55 |
| copR | AAC33719.1 | regulatory protein CopR | Not tested | SPI-5 | Protein | 6e-55 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | BAC0638 | Protein | 3e-61 | 61 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | BAC0125 | Protein | 5e-62 | 59 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | BAC0083 | Protein | 8e-65 | 58 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | BAC0308 | Protein | 4e-59 | 58 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | BAC0111 | Protein | 5e-67 | 58 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | BAC0197 | Protein | 1e-62 | 58 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | BAC0347 | Protein | 5e-61 | 55 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_007622.3794948.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_003923.1003417.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_013450.8614146.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_002951.3238224.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_007793.3914065.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_002758.1121390.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_010079.5776364.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_002952.2859858.p0 | Protein | 1e-34 | 42 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_002952.2859905.p0 | Protein | 4e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_003923.1003749.p0 | Protein | 3e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_002758.1121668.p0 | Protein | 3e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_009641.5332272.p0 | Protein | 3e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_013450.8614421.p0 | Protein | 3e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_007793.3914279.p0 | Protein | 3e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_007622.3794472.p0 | Protein | 4e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_002745.1124361.p0 | Protein | 3e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_009782.5559369.p0 | Protein | 3e-33 | 41 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | NC_002951.3237708.p0 | Protein | 3e-33 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | VFG0596 | Protein | 2e-56 | 55 |
| Shew_3258 | YP_001095383.1 | two component heavy metal response transcriptional regulator | VFG1389 | Protein | 3e-37 | 42 |
