Gene Information

Name : Shew_2658 (Shew_2658)
Accession : YP_001094783.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3132095 - 3132778 bp
Length : 684 bp
Strand : -
Note : PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein

DNA sequence : 
ATGACCATAGCGATTCAAGCATTGACTAAGATCTATAACCCCGAGAGTGACTTTCCGGTGGCGGCGGTAAAGTCTCTGGA
CCTCACCATAGCCCAGGGCGAGTTTGTCGCCATCATGGGCCCCTCGGGCTCAGGCAAGACCACGCTGCTGAACATGATCG
GTGGCATCGACAGTCCGAGTAGCGGCGCCGTATTTATCGACGGTGAGGATATCACCCACCTGAGCGAGCAGGCGCTAATC
GCCTTTCGCCGCGACCATGTGGGCTTTATCTTTCAGGACTATAGCCTGCTGCCCGTGCTGACGGCGCTGGAGAATGTCGA
GTTTGTCATGCAGCTGCAGGGCCACAGCGAGGCCGAGTGTCGTGATCGGGCCATGGCGCTGCTCGCCCAGGTGGGGCTGG
CAGCTCAGCAGGATAAGATCCCCGCCAAGTTGTCGGGCGGGCAACAGCAGAGGGTAGCGGTTGCAAGGGCTCTGGCCCCC
AGACCGAGGTTTGTGATGGCCGATGAGCCCACGGCCAACCTGGATGCTAAGAGCACCGCCGAGCTGCTGGATATCATGCA
GTCGCTCAATGAGCAGGAGGGCACGACTTTTATCTTTTCGACCCATGACCCCAGGGTGATCGCCAGGGCCAAGCGGGTGA
TCGTTTTCGAGGATGGTCGCCTGGTCGAGGATCGCCGTCAATGA

Protein sequence : 
MTIAIQALTKIYNPESDFPVAAVKSLDLTIAQGEFVAIMGPSGSGKTTLLNMIGGIDSPSSGAVFIDGEDITHLSEQALI
AFRRDHVGFIFQDYSLLPVLTALENVEFVMQLQGHSEAECRDRAMALLAQVGLAAQQDKIPAKLSGGQQQRVAVARALAP
RPRFVMADEPTANLDAKSTAELLDIMQSLNEQEGTTFIFSTHDPRVIARAKRVIVFEDGRLVEDRRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-23 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-25 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-25 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_2658 YP_001094783.1 ABC transporter-like protein NC_008702.1.4606598. Protein 4e-28 43
Shew_2658 YP_001094783.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-32 43