Gene Information

Name : Shew_2402 (Shew_2402)
Accession : YP_001094527.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2817719 - 2818459 bp
Length : 741 bp
Strand : -
Note : PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sdn:Sden_2367 ABC transporter-related protein

DNA sequence : 
ATGTTAGAAAATAGTGCTATCAAGGTCAGTGATCTCTATAAATCGGTAACTACCCAAGAGGGAGAGCTTACTATCCTCAA
TGGCATCAATCTGGATGTCAAGTCGGGGGAGAGTGTGGCGATTCTTGGCCCCTCGGGTTCGGGTAAGTCGACCCTGCTCG
GACTGCTGGCGGCGCTCGACTCGCCCACCAAGGGGGAGATAGTCCTCGATGGCGTGACCCTCAATGGTTTGGATGAGGAA
GGCAAGGCCGCACTGCGTAAACAGAAAGTCAGCTTTATCTTTCAGTCTTTCATGCTGGTCGATACCCTCAACGCCCTGGA
GAACGTCATGCTACCGGCCGAGCTATCTGGGATCAGTAACGCCAAGCAGAAGGCGCAGCAGATGCTCGAGCGTGTGGGCC
TAAGCCACAGACTCAACCATTTCCCCAACCAGCTCTCAGGCGGCGAGCAGCAGCGTGTCGCCATCGCCAGGGCCTTCATC
TGTGAGCCTAAGGTGCTGTTTGCCGACGAGCCGACGGGAAACCTGGATGGGGCCAACAGCGACAGGGTGGCGGACATGCT
GTTTGAGCTCAACCGCGAGAGTGACACCACCCTGGTGCTGGTGACCCATGATCTCCAGCTGGCCAATCGTTGTCAGCGCC
GCCTGAACATGCAGGCGGGGCAGTTAAGTGAGGTGATGAGCGAAACTGACAACAGCGGCGAGCAAGAGATGGCCCGTTCG
AGCGCAGCGGAGGCGAGTTAA

Protein sequence : 
MLENSAIKVSDLYKSVTTQEGELTILNGINLDVKSGESVAILGPSGSGKSTLLGLLAALDSPTKGEIVLDGVTLNGLDEE
GKAALRKQKVSFIFQSFMLVDTLNALENVMLPAELSGISNAKQKAQQMLERVGLSHRLNHFPNQLSGGEQQRVAIARAFI
CEPKVLFADEPTGNLDGANSDRVADMLFELNRESDTTLVLVTHDLQLANRCQRRLNMQAGQLSEVMSETDNSGEQEMARS
SAAEAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-27 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-27 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_2402 YP_001094527.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-29 43
Shew_2402 YP_001094527.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-33 43
Shew_2402 YP_001094527.1 ABC transporter-like protein NC_012469.1.7685735. Protein 9e-29 42