Gene Information

Name : Shew_2299 (Shew_2299)
Accession : YP_001094424.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : 5.99.1.2
Position : 2692559 - 2694571 bp
Length : 2013 bp
Strand : -
Note : decatenates replicating daughter chromosomes

DNA sequence :
ATGATCTTATACATAGCAGAGAAGCCCAGTCTCGGGCGGGCAATCGCCGATGTGTTACCTAAACCCCACAAGAAGGGCGA
GGGCTATATCACGGCGGCCAATGGCGATACCGTCTCCTGGTGCATAGGCCACCTGCTGGAGCAGGCCGAGCCCGACAGCT
ATGATCCCGCCTTTAAGTCCTGGTCGTTCGACCATCTGCCCATAGTGCCGCAGCAGTGGAAGATGACCCCTAAGAGCAAG
ACTCGCGGTCAGCTCAGCGTGCTGAGAAAATTGGTCAAGCAGGCCAGTCAGTTGGTGAACGCCGGGGATCCTGACCGTGA
AGGTCAGCTGCTGGTGGATGAGGTGATCGCCTATCTGGGGGTCAAGGGCGATAAGCTAGAGCAGACCCAGCGTCTGCTGG
TGAGCGACCTCAACCCTCAGGCCGTTAAGCGTGCCCTGGGGCAGCTGCGTAGCAACCGCGAGTTTATCCCCCTGTCGACC
TCGGCGCTGGCGCGCTCCCGCGCCGACTGGCTCTATGGCATGAACATGACCCGCGCCTATACGCTGCAGGGGCGCAAGGT
GGGCTATCAGGGAGTGCTCTCTGTCGGTCGGGTGCAGACCCCCCTGCTGGGCCTGGTGGTGCGCCGCGATGAGGCTATTG
AACATTTTGTCAGCAAGCCTTTCTATGAGGTGCTGGCCAATCTCTACACCCAGGAACAGGCGCATTTTAAGGCCAAGTGG
CAACCCAGCGAGGCCTGTCAGCCCTACATGGATGAGGAGGGGCGGGTGCTGTCGCGCCGCCTGGCGGAAAACGTGGTGGG
GCGGATCACAGAGCAGCCCGCCAAGGTGACAGATCTGCAGGCCAAAGATAAGCAGCAGGGGCAACCCTTACCCTATAACT
TGTCGTCGCTGCAGATAGATGCGGCGAAGCGATTCGGCATGAGTGCCAAGACGGTGCTCGATACCTGTCAGTCACTGTAT
GAGAAACATAAGCTGATCACCTATCCGCGCTCCGATAGCCGTTATCTGCCCAAGGAGCAGCTGGCCCTGGCGCCCAGCGT
GATCGGCGCCGTGCTCAAGGGGGCTGGCGAACTCACCGCCCAGTGCGCCGCGCCGGATCTTAAGATAGTCTCCAAGGCCT
GGAACGATGCCAAGGTGGATGCCCACCACGCCATAGTGCCCACCGAGAAGGTGGCCAACCTGAGTGCCCTGACTCAGGCC
GAGAAACAGATCTACCTGCAACTGGCCCGTCAATATCTGGCGCAGTTTTACCCCGTCTATCGTTACCATGAGACTCAGGT
TGAGGTGGAGATCGCCGGCGGCCATTTTCACACCAAGGCCAAACAGGAGATCGCCCTAGGCTGGAAGCAACTGTTCCCTA
AGCGCAGCGATGACAAAACAGACGGCGAGGGCGACGAGGCCCTGGCCCAGCTGCCGCCGCTACATAAGGGACAGATGCTG
CACTCTGGCCAGGGAGAGCTTATCGAGAAGCAGACCCAGCCGCCCAAGGCCTTTACCGATGCCACCCTGCTGAGCGCCAT
GACGGGGATCAGCCGCTACGTGACCAACCCAGAGATCCGTAAGATCCTCAAGGAAACCGACGGCTTGGGCACAGAGGCGA
CCCGCGCCGGGATCATAGAGTTGCTGTTCAAGCGTGGTTTTCTGGCCCGCCAGGGGAAGTCTATCGTCTCGACCCCGGTC
GGTCGCGGCCTCATCAATAGCCTACCGGAGTCCGCTACCACGCCTGATATGACGGCGTTGTGGGAGAGTCACCTTGACGC
CATCAGCCGTAAAGAGGCCAAGTACCTGAGCTTCATGGCGCCGCTAGTCGAGTCGCTCAATGGGCTTATCATGCAGGCCG
GTGCCCAGCTGCCCAAGGCCTTGCAAGGTGTCGAGGCGCCTAAGCGTTCGTTTAAGAAACGTGGCTATGGCAATCGACGC
GGCACGGCGACAGGTGCCAAAGGCAAGGCTAGCGGGGCGAAAAAGACTGCGGCTAGAGCCGCGTCTAAAACAAGGGCTAA
AACAAGCGCCTAA

Protein sequence :
MILYIAEKPSLGRAIADVLPKPHKKGEGYITAANGDTVSWCIGHLLEQAEPDSYDPAFKSWSFDHLPIVPQQWKMTPKSK
TRGQLSVLRKLVKQASQLVNAGDPDREGQLLVDEVIAYLGVKGDKLEQTQRLLVSDLNPQAVKRALGQLRSNREFIPLST
SALARSRADWLYGMNMTRAYTLQGRKVGYQGVLSVGRVQTPLLGLVVRRDEAIEHFVSKPFYEVLANLYTQEQAHFKAKW
QPSEACQPYMDEEGRVLSRRLAENVVGRITEQPAKVTDLQAKDKQQGQPLPYNLSSLQIDAAKRFGMSAKTVLDTCQSLY
EKHKLITYPRSDSRYLPKEQLALAPSVIGAVLKGAGELTAQCAAPDLKIVSKAWNDAKVDAHHAIVPTEKVANLSALTQA
EKQIYLQLARQYLAQFYPVYRYHETQVEVEIAGGHFHTKAKQEIALGWKQLFPKRSDDKTDGEGDEALAQLPPLHKGQML
HSGQGELIEKQTQPPKAFTDATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRAGIIELLFKRGFLARQGKSIVSTPV
GRGLINSLPESATTPDMTALWESHLDAISRKEAKYLSFMAPLVESLNGLIMQAGAQLPKALQGVEAPKRSFKKRGYGNRR
GTATGAKGKASGAKKTAARAASKTRAKTSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 4e-117 42
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-117 42
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 4e-117 42
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 1e-105 42
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 2e-113 41