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Name : Shew_2299 (Shew_2299) Accession : YP_001094424.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 2692559 - 2694571 bp Length : 2013 bp Strand : - Note : decatenates replicating daughter chromosomes DNA sequence : ATGATCTTATACATAGCAGAGAAGCCCAGTCTCGGGCGGGCAATCGCCGATGTGTTACCTAAACCCCACAAGAAGGGCGA GGGCTATATCACGGCGGCCAATGGCGATACCGTCTCCTGGTGCATAGGCCACCTGCTGGAGCAGGCCGAGCCCGACAGCT ATGATCCCGCCTTTAAGTCCTGGTCGTTCGACCATCTGCCCATAGTGCCGCAGCAGTGGAAGATGACCCCTAAGAGCAAG ACTCGCGGTCAGCTCAGCGTGCTGAGAAAATTGGTCAAGCAGGCCAGTCAGTTGGTGAACGCCGGGGATCCTGACCGTGA AGGTCAGCTGCTGGTGGATGAGGTGATCGCCTATCTGGGGGTCAAGGGCGATAAGCTAGAGCAGACCCAGCGTCTGCTGG TGAGCGACCTCAACCCTCAGGCCGTTAAGCGTGCCCTGGGGCAGCTGCGTAGCAACCGCGAGTTTATCCCCCTGTCGACC TCGGCGCTGGCGCGCTCCCGCGCCGACTGGCTCTATGGCATGAACATGACCCGCGCCTATACGCTGCAGGGGCGCAAGGT GGGCTATCAGGGAGTGCTCTCTGTCGGTCGGGTGCAGACCCCCCTGCTGGGCCTGGTGGTGCGCCGCGATGAGGCTATTG AACATTTTGTCAGCAAGCCTTTCTATGAGGTGCTGGCCAATCTCTACACCCAGGAACAGGCGCATTTTAAGGCCAAGTGG CAACCCAGCGAGGCCTGTCAGCCCTACATGGATGAGGAGGGGCGGGTGCTGTCGCGCCGCCTGGCGGAAAACGTGGTGGG GCGGATCACAGAGCAGCCCGCCAAGGTGACAGATCTGCAGGCCAAAGATAAGCAGCAGGGGCAACCCTTACCCTATAACT TGTCGTCGCTGCAGATAGATGCGGCGAAGCGATTCGGCATGAGTGCCAAGACGGTGCTCGATACCTGTCAGTCACTGTAT GAGAAACATAAGCTGATCACCTATCCGCGCTCCGATAGCCGTTATCTGCCCAAGGAGCAGCTGGCCCTGGCGCCCAGCGT GATCGGCGCCGTGCTCAAGGGGGCTGGCGAACTCACCGCCCAGTGCGCCGCGCCGGATCTTAAGATAGTCTCCAAGGCCT GGAACGATGCCAAGGTGGATGCCCACCACGCCATAGTGCCCACCGAGAAGGTGGCCAACCTGAGTGCCCTGACTCAGGCC GAGAAACAGATCTACCTGCAACTGGCCCGTCAATATCTGGCGCAGTTTTACCCCGTCTATCGTTACCATGAGACTCAGGT TGAGGTGGAGATCGCCGGCGGCCATTTTCACACCAAGGCCAAACAGGAGATCGCCCTAGGCTGGAAGCAACTGTTCCCTA AGCGCAGCGATGACAAAACAGACGGCGAGGGCGACGAGGCCCTGGCCCAGCTGCCGCCGCTACATAAGGGACAGATGCTG CACTCTGGCCAGGGAGAGCTTATCGAGAAGCAGACCCAGCCGCCCAAGGCCTTTACCGATGCCACCCTGCTGAGCGCCAT GACGGGGATCAGCCGCTACGTGACCAACCCAGAGATCCGTAAGATCCTCAAGGAAACCGACGGCTTGGGCACAGAGGCGA CCCGCGCCGGGATCATAGAGTTGCTGTTCAAGCGTGGTTTTCTGGCCCGCCAGGGGAAGTCTATCGTCTCGACCCCGGTC GGTCGCGGCCTCATCAATAGCCTACCGGAGTCCGCTACCACGCCTGATATGACGGCGTTGTGGGAGAGTCACCTTGACGC CATCAGCCGTAAAGAGGCCAAGTACCTGAGCTTCATGGCGCCGCTAGTCGAGTCGCTCAATGGGCTTATCATGCAGGCCG GTGCCCAGCTGCCCAAGGCCTTGCAAGGTGTCGAGGCGCCTAAGCGTTCGTTTAAGAAACGTGGCTATGGCAATCGACGC GGCACGGCGACAGGTGCCAAAGGCAAGGCTAGCGGGGCGAAAAAGACTGCGGCTAGAGCCGCGTCTAAAACAAGGGCTAA AACAAGCGCCTAA Protein sequence : MILYIAEKPSLGRAIADVLPKPHKKGEGYITAANGDTVSWCIGHLLEQAEPDSYDPAFKSWSFDHLPIVPQQWKMTPKSK TRGQLSVLRKLVKQASQLVNAGDPDREGQLLVDEVIAYLGVKGDKLEQTQRLLVSDLNPQAVKRALGQLRSNREFIPLST SALARSRADWLYGMNMTRAYTLQGRKVGYQGVLSVGRVQTPLLGLVVRRDEAIEHFVSKPFYEVLANLYTQEQAHFKAKW QPSEACQPYMDEEGRVLSRRLAENVVGRITEQPAKVTDLQAKDKQQGQPLPYNLSSLQIDAAKRFGMSAKTVLDTCQSLY EKHKLITYPRSDSRYLPKEQLALAPSVIGAVLKGAGELTAQCAAPDLKIVSKAWNDAKVDAHHAIVPTEKVANLSALTQA EKQIYLQLARQYLAQFYPVYRYHETQVEVEIAGGHFHTKAKQEIALGWKQLFPKRSDDKTDGEGDEALAQLPPLHKGQML HSGQGELIEKQTQPPKAFTDATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRAGIIELLFKRGFLARQGKSIVSTPV GRGLINSLPESATTPDMTALWESHLDAISRKEAKYLSFMAPLVESLNGLIMQAGAQLPKALQGVEAPKRSFKKRGYGNRR GTATGAKGKASGAKKTAARAASKTRAKTSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-117 | 42 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 4e-117 | 42 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-117 | 42 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 1e-105 | 42 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 2e-113 | 41 |
