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Name : Shew_2020 (Shew_2020) Accession : YP_001094145.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 2332809 - 2334095 bp Length : 1287 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATCCCAAATTTTTACGTACTGAATTAGAAGCGACCGCCGAGCGTCTCGCCACCCGTGGTTTTATCCTGGATGT GGATCGTCTCAGCAAGTTAGAGGAAAAGCGTAAGTCACTACAGGTGGCGACAGAAGAGCTGCAAGCGTCCCGTAATGCGA TCTCCAAGTCTATCGGTCAGGCTAAGGCAAAGGGCGAAGATGTTGCACCTATCATGGCCAAAGTCGGCGATCTTGGCGCC GAGCTTAGCAGTAAAGAAGCCGAGTTAAAGCAGCTGCTGGAAGAGCTGAATGCTATCGCCATGAGCGTGCCTAACCTGCC GGACGAGTCGGCGCCTATTGGTGCGGACGAAAACGACAACGTCGAGATCCGCCGCTGGGGTGAGCCTAAGCAGTTTGATT TCGATGTGAAAGATCATGTGGATCTGGGTGAGCAACACGCTGGTCTTGATTTCAAGAGTGCCGTTAAGATCACCGGTTCT CGTTTCATCGTGATGAAGGGGCAGATCGCCCGCATGCACCGTGCGCTAACTCAGTTCATGCTGGATCTGCACACCACAGA GCATGGTTACACTGAAACCTATGTGCCGCTGCTGGTTAACGAAGACAGCCTGCTTGGTACCGGTCAGCTGCCTAAGTTTG GTGAAGATCTGTTCCACACCAAGCCTGCTACCGAAGAAGGTCAGGGCCTAAGCCTGATCCCAACCGCCGAGGTGCCGCTG ACTAACCTGGCTCGCGATACCATTATCGATGAAGATGAGCTGCCGATTAAGATGACGGCTCATACGGCTTGTTTCCGCAG CGAAGCGGGCTCATACGGCCGTGATACTCGTGGTCTTATTCGTCAGCACCAGTTCGACAAGGTAGAGTTGGTTCAGCTGG TGAAACCAGAAGACTCTATGGCCGCGCTCGAGAGTCTGACTCAACACGCTGAAACCGTGCTGCAACGCCTGGGTCTGCCA TATCGCACTGTAGTACTTTGTACTGGCGATATGGGCTTTGGCGCGGCTAAGACCTTTGATATTGAAGTCTGGCTGCCTGC ACAGAATACTTACCGCGAGATCTCATCTTGCAGCAACATGCAAGATTTTCAGGCTCGTCGCATGCAAGCTCGCTATAAAG CAAAGTCAGCCAAGAAGCCTGCACTGCTGCACACATTGAATGGTTCAGGTTTAGCGGTCGGTCGTACTTTGGTCGCCGTG TTGGAAAACTATCAAAATGCCGATGGTTCAATCACAGTTCCAGAGGCGCTGCGTCCATATATGGGCGGGCTGACTCAAAT AGGCTAA Protein sequence : MLDPKFLRTELEATAERLATRGFILDVDRLSKLEEKRKSLQVATEELQASRNAISKSIGQAKAKGEDVAPIMAKVGDLGA ELSSKEAELKQLLEELNAIAMSVPNLPDESAPIGADENDNVEIRRWGEPKQFDFDVKDHVDLGEQHAGLDFKSAVKITGS RFIVMKGQIARMHRALTQFMLDLHTTEHGYTETYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPL TNLARDTIIDEDELPIKMTAHTACFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPEDSMAALESLTQHAETVLQRLGLP YRTVVLCTGDMGFGAAKTFDIEVWLPAQNTYREISSCSNMQDFQARRMQARYKAKSAKKPALLHTLNGSGLAVGRTLVAV LENYQNADGSITVPEALRPYMGGLTQIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-106 | 56 |
