Gene Information

Name : Shew_1969 (Shew_1969)
Accession : YP_001094094.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 2275612 - 2276211 bp
Length : 600 bp
Strand : -
Note : PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO1416 DNA-binding response regulator

DNA sequence : 
ATGTGTAATCTCTATCTAGTCGATGACGACCAAGACGTCTTAGATTCTTTAAAGTGGATGCTTGAAGGCATGGGCTACGC
CCCCCAAACCTTCACCAATGCAAGCTGCTTCCTAACTCAGGTAGATCTGCATCTGCCCGGGGTCGCTATTTTGGATATTC
AGATGCCGGGTGTCGATGGCATAGAGTTACTGCAGCAGATCAAGCAGCAAGACAGCCCGCTGAGTGTCATCATGCTCACC
GGCCACGGCACTATCTCGATGGCCGTACAAGCCTTACAACATGGCGCCATCGACTTCTTAGAAAAACCCGCCGATGGCGA
CAAACTCCAAGCCTTGATGAAAAAGGCTTCATTGATGAGCCTTGACGCCTACCAGCATAAAGAAAAGGCATCGAGTGTGG
CACAACGAATCGCTTCGCTGACGCCGAGAGAACAACAAGTCATGCACGCCGTGCTCGCCGGTAAGTTAAACAAGGTCATT
GCCGCTGAACTCAACATAGCCCAGCGAACCATTGAGCTCCACCGCCAAAAAGTTATGCAGAAGATGCAGGTGAATAATGT
CGCCGAGCTCGCTTATTTGATGGCGATAACTAAACCCTAA

Protein sequence : 
MCNLYLVDDDQDVLDSLKWMLEGMGYAPQTFTNASCFLTQVDLHLPGVAILDIQMPGVDGIELLQQIKQQDSPLSVIMLT
GHGTISMAVQALQHGAIDFLEKPADGDKLQALMKKASLMSLDAYQHKEKASSVAQRIASLTPREQQVMHAVLAGKLNKVI
AAELNIAQRTIELHRQKVMQKMQVNNVAELAYLMAITKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 1e-25 41
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 2e-25 41
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 2e-25 41
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 2e-25 41
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 2e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_1969 YP_001094094.1 two component LuxR family transcriptional regulator VFG0488 Protein 5e-26 41