|
Name : Shew_1856 (Shew_1856) Accession : YP_001093981.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 2135122 - 2135859 bp Length : 738 bp Strand : - Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGAATGTGACTCTGTTAATCCCTGCTCGCTATGGCTCAAGCCGTTTTCCGGGTAAGCCATTGGCGCCGATTAACGGTAA GCCGATGATCCAGCACGTTTACGAGCGTGCGGCGCTGGCAAAAGGCTTAACTGCCATCTATGTGGCCACCGACGATCTGC GCATCAAGGAGGCCGTTGAAGCCTTTGGCGGTAAGGTAGTCATGACAGATGCCAATGCTGCCTCCGGCACCGACAGAATC GAGGATGCAATCACCCAGCTTGGCTTGGCGGACGATGACCTGGTGATCAACCTCCAGGGCGATCAGCCGCTGATCGATCC TATCTCCATCGAGCAGATCATCACACTGTTTGAGCGTCATCCAGGGGAGTTCGGCATGGCAACCCTAGGCTATGAGATCA CCGAAGAGCATGAGCTTAACGATCCCAAGCACGTCAAGATGGTGTTCGACAACCAATTTAACGCCCTCTATTTCTCTCGT GCCCGCATCCCCTTCGGCCGTGATACAGATGACTACCCGGTCTACAAACACCTGGGCGTGTATGCCTACACCCGCGAGTT TGTCAGAACCTTCAATAAGCTGCCACTTGGCCGTTTAGAAGATCTCGAAAAGCTTGAGCAGCTGCGCGCACTGGAACATG GCCACACGATCAAGGTTGCCATCAGCGCCTTCGACTCGCCCGAGGTCGATACCCCAGAAGATATTCGCATCTGCGAAGCA CGCCTTGCGGTAGACTAG Protein sequence : MNVTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERAALAKGLTAIYVATDDLRIKEAVEAFGGKVVMTDANAASGTDRI EDAITQLGLADDDLVINLQGDQPLIDPISIEQIITLFERHPGEFGMATLGYEITEEHELNDPKHVKMVFDNQFNALYFSR ARIPFGRDTDDYPVYKHLGVYAYTREFVRTFNKLPLGRLEDLEKLEQLRALEHGHTIKVAISAFDSPEVDTPEDIRICEA RLAVD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 1e-42 | 45 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 9e-43 | 45 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 4e-43 | 45 |
