Gene Information

Name : Shew_1536 (Shew_1536)
Accession : YP_001093662.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Resistance
Product : putative chloramphenicol acetyltransferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 1764380 - 1765006 bp
Length : 627 bp
Strand : +
Note : KEGG: dps:DP1720 probable chloramphenicol acetyltransferase

DNA sequence : 
ATGAAAAATTATTTTGATAGCCCTTTTGCCGGCCAATCGCTAAAGGAGCAGGTCACTAATCCCAATATTATCGTGGGCGA
GCATAGCTACTATTCTGGCTATTATCATCAACACAGCTTCGATGACTGCGCCCGCTACCTAGCGCCCGATAGGGACGATG
TCGACCGGCTTATCATAGGCAACTACTGTTCCATTGGCTCTGGCGCCGTGTTTATGATGGCGGGTAATCAGGGCCATAGA
AGCGACTGGGTCAGTAGCTTTCCCTTTTTCTATCAACAGGGTGATAGCTTCTCGGGCGCCCAGGATGGTTTTGTCCGCGC
CGGTGATACCCTGATAGGCAATGATGTCTGGATAGGCTCCGAAGCGATGATCATGCCCGGAGTCACAGTAGGGGATGGCG
CTGTTATTGCGAGTCGCGCCGTGGTGACCAAAGATGTGCCAGCCTACGCCGTAGTAGGCGCCAACCCAGCGAAATTGATC
CGCTATCGTTTTTCGGATGAAGAGGTCGCCATGTTAATGGAGATGCAGTGGTGGCACTGGAGTGATGACAAGGTGAAAGC
GGCGATGCATCTGCTCTGTAGCAAGGATATTGCCGGCCTTTACGCCTATTGGCAGCAGACCCGTTAA

Protein sequence : 
MKNYFDSPFAGQSLKEQVTNPNIIVGEHSYYSGYYHQHSFDDCARYLAPDRDDVDRLIIGNYCSIGSGAVFMMAGNQGHR
SDWVSSFPFFYQQGDSFSGAQDGFVRAGDTLIGNDVWIGSEAMIMPGVTVGDGAVIASRAVVTKDVPAYAVVGANPAKLI
RYRFSDEEVAMLMEMQWWHWSDDKVKAAMHLLCSKDIAGLYAYWQQTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 7e-65 72
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 3e-63 70
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 3e-63 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase AY123251.gene2.p01 Protein 2e-65 72
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase AY740681.1.gene5.p01 Protein 1e-63 70
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase AF322577.2.gene4.p01 Protein 1e-63 70
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase JF268688.1.gene6.p01 Protein 4e-61 66
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase NC_002516.2.878374.p Protein 6e-60 64
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase CP001581.1.gene990.p Protein 6e-37 44
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase NC_010410.6000796.p0 Protein 7e-29 44
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase NC_011595.7057349.p0 Protein 7e-29 44
Shew_1536 YP_001093662.1 putative chloramphenicol acetyltransferase AM180355.1.gene2499. Protein 1e-29 43