|
Name : fliP (Shew_1376) Accession : YP_001093504.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 1585148 - 1585915 bp Length : 768 bp Strand : + Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGAACCCAATAAAAATCATGAAACGGATCTTGACCCCACTCTTGTTACTCCTGGCCGTGATGGCGCCGCAACTGGCACT GGCACAGGATGGGATTCTCCCTGCGGTAACTGTCACCACAGGCGCCGATGGCTCGACCCAATATTCGGTGACCATGCAGA TATTGCTGCTGATGACGGCGCTGAGTTTTCTGCCCGCCATGGTCATCATGCTGACCTCTTTTACCCGCATCATAGTGGTG CTGTCGATTCTGCGCCAGGCGATCGGCCTGCAGCAGACGCCGTCGAATCAGGTGCTGATCGGTATGAGTCTGTTTATGAC CTTCTTCATCATGGCGCCCGTGTTCGACAAGATCTACGACCAGGCGGTGAAGCCGTATATCGACGAGACCATGACCATAG AGCAGGCCTATGACAAGGGCAAGGAGCCGCTGCGGGCCTTTATGTTGGCTCAGACCCGGCTCACGGATTTGGAGACCTTC GTCCAGATCTCTGGCTATCAGAATATTCAGTCGCCCGAAGATGCGCCCATGAGCGTGCTGATCCCTGCTTTCATTACCAG TGAACTCAAGACCGCCTTCCAGATAGGCTTCATGCTGTTCGTGCCCTTCCTGGTGCTTGATCTCGTGGTGGCCAGTATCC TGATGGCCATGGGTATGATGATGCTGTCGCCCATGATCGTCTCCTTGCCCTTTAAGATCATGTTGTTTGTGTTAGTGGAT GGTTGGAGCCTGGTGATGGGCACCCTGGCCAACAGTTTTGGGATCTAG Protein sequence : MNPIKIMKRILTPLLLLLAVMAPQLALAQDGILPAVTVTTGADGSTQYSVTMQILLLMTALSFLPAMVIMLTSFTRIIVV LSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQAVKPYIDETMTIEQAYDKGKEPLRAFMLAQTRLTDLETF VQISGYQNIQSPEDAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVD GWSLVMGTLANSFGI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 5e-15 | 44 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 5e-15 | 44 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 5e-15 | 44 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 4e-16 | 43 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-17 | 41 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 4e-18 | 41 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 9e-17 | 41 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 8e-19 | 41 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 8e-19 | 41 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 6e-19 | 41 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-19 | 41 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-19 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_001093504.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 2e-57 | 67 |
| fliP | YP_001093504.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 7e-51 | 61 |
| fliP | YP_001093504.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 8e-53 | 60 |
| fliP | YP_001093504.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 5e-48 | 55 |
| fliP | YP_001093504.1 | flagellar biosynthesis protein FliP | VFG0394 | Protein | 2e-17 | 42 |
