Gene Information

Name : Shew_1257 (Shew_1257)
Accession : YP_001093386.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1453953 - 1454426 bp
Length : 474 bp
Strand : -
Note : PFAM: DNA repair protein RadC; KEGG: son:SO1455 DNA repair protein, RadC family

DNA sequence : 
ATGCACAAAGTGATCACCCTACCCAGCAACAGCTGGTCACAAACTTCATCGCAAATCCTCGAAACTGCAGCAGGCATAGT
GGCTGAGCGTTTCGTTCGTGGTGATGCCTTTTGTAACCCCGATGCCACCCGCGACTTTCTGCGCTTTAAGCTCCACCAGC
ACCAACGTGAAGTATTTGGCGTGATGATGCTGGATAGCCAGCATCGGCTAATAGAATTCAATGAGATGTTTTTCGGCACA
ATTGATGCCGCCAACGTCTACCCCAGGGAGGTCGTTAAGGCGGTACTGCTATGTAATGCCGCTGCGGTGATCTTGGCCCA
TAACCATCCTTCAGGCTGTGCAGAGCCATCAGCGGCCGACAGGCGTATCACCGAGCGGTTAATCAACGCTCTCAGTACCA
TAGATGTGCCAGTGCTGGACCACATTGTGGTGGGCGACCAATGTGTGTCGTTTGCGGAGCGCGGTTGGCTCTAA

Protein sequence : 
MHKVITLPSNSWSQTSSQILETAAGIVAERFVRGDAFCNPDATRDFLRFKLHQHQREVFGVMMLDSQHRLIEFNEMFFGT
IDAANVYPREVVKAVLLCNAAAVILAHNHPSGCAEPSAADRRITERLINALSTIDVPVLDHIVVGDQCVSFAERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 4e-42 67
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 9e-40 62
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 9e-40 62
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-40 62
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-21 51
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 1e-21 51
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-21 51
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 3e-21 51
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-21 51
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-21 51
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-21 51
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 1e-21 51
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-21 51
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 4e-21 50
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-21 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 5e-25 49
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-21 45
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 6e-24 45
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 4e-22 44
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-21 44
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 4e-21 44
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-21 44
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-21 44
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-21 44
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-21 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_1257 YP_001093386.1 DNA repair protein RadC VFG1119 Protein 3e-40 62
Shew_1257 YP_001093386.1 DNA repair protein RadC VFG1678 Protein 1e-21 51
Shew_1257 YP_001093386.1 DNA repair protein RadC VFG1066 Protein 5e-22 45
Shew_1257 YP_001093386.1 DNA repair protein RadC VFG1617 Protein 2e-22 44
Shew_1257 YP_001093386.1 DNA repair protein RadC VFG1528 Protein 7e-22 44
Shew_1257 YP_001093386.1 DNA repair protein RadC VFG0660 Protein 3e-22 44