Gene Information

Name : Shew_1252 (Shew_1252)
Accession : YP_001093381.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1450808 - 1451473 bp
Length : 666 bp
Strand : +
Note : KEGG: vfi:VFA0515 transposase

DNA sequence :
ATGCGAACACGTTATCCTGCTAACACTAATCTTGTCGTGATCGATAATGGTCAATATCAAGGATGGAAAGTCAATTCTAG
ACCACTAAGTAAGCAATACTTGGATGCAATCCTCCGAACCATGCATGCCGCTCTTGATGAACATCCTCGTACCTTAATGG
TACGATTTGATTTGCATTTGCCGCTTCTCAATTTCGATGATTCACCGAGGTTTTATGATTCAACGGTCATCAGTAAATTT
TTCAAGTCACTTAATGCAAAAATCCAACATGATAGAGCAGTCAAACTACGAGAGGGAAAGCGTACACATCCATGCACGTT
ACGATATGTATGGGTGAAGGAATGTCGGGAGGCTGCTACGGACCATTATCATGTGGCGATTTTTCTCAATAACGATGCTT
ACTGCCATTTGGGAAGTTACAGTAATGGTGGCAACAATCTAAGAGCTAGAATTGTTGAGGCATGGGCTAGTGCTATTGGA
GTTGATGAGTTCGTTGCAGAAGATAAAGTTCATTGCCCTAGTAAACCATTGTATTACATAAATCGTAATTCGGTTGGTTT
TACTACAAGTTTTGCTAAAGCTTTTGAACGATTGAGTTATTTAGCCAAGCTTGAGACTAAGCACTATGGTGATAACACTC
GTTCTTTTGGGTGTAGTCAACGTTAG

Protein sequence :
MRTRYPANTNLVVIDNGQYQGWKVNSRPLSKQYLDAILRTMHAALDEHPRTLMVRFDLHLPLLNFDDSPRFYDSTVISKF
FKSLNAKIQHDRAVKLREGKRTHPCTLRYVWVKECREAATDHYHVAIFLNNDAYCHLGSYSNGGNNLRARIVEAWASAIG
VDEFVAEDKVHCPSKPLYYINRNSVGFTTSFAKAFERLSYLAKLETKHYGDNTRSFGCSQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ADD91714.1 hypothetical protein Not tested PAI-I AL862 Protein 6e-24 42
ECO103_3573 YP_003223434.1 hypothetical protein Not tested LEE Protein 6e-25 41
unnamed AAL08464.2 unknown Not tested SRL Protein 2e-23 41
unnamed AAW51744.1 Aec61 Not tested AGI-3 Protein 2e-23 41
unnamed CAI43834.1 hypothetical protein Not tested LEE Protein 1e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_1252 YP_001093381.1 transposase VFG1055 Protein 1e-23 41