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Name : Shew_1214 (Shew_1214) Accession : YP_001093343.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1408043 - 1410610 bp Length : 2568 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGAACGCCGTCGATACTCAATATCTTGAAAAGCACACCCCCATGATGCGTCAATATCTGACGCTGAAAGCCGAAACACC CGATATGTTGCTTTTTTATCGTATGGGAGATTTTTACGAGCTCTTCTACGACGATGCTAAGCGGGCCTCAGAGCTGCTGG GGATCTCCCTGACCGCTCGCGGCAAGAGTGGCGGCGATCCTATCCCCATGGCAGGCATCCCCTACCATGCGGTAGAAGGC TATCTTGCTAAGCTTGTGCAGCTCAGGGTATCTGTGGCGATCTGCGAGCAGATAGGCGATCCCGCCACGACCAAGGGGCC GGTAGAACGTAAGATTGTTCGCATCGTCACCCCGGGTACGCTTACAGATGAGGCCCTGCTGCAGGAGCGGCAGGACAACC TGCTGGCCGCCGTCTATCACGGCAAGGTGGGTTTTGGTTACGCGACCCTGGATGTCTCATCCGGGCGCTTCGTGGTCACC GAACTTGCCAGCAAAGAGGCGCTTGAAGCCGAGCTGCAACGCACCAATCCAGCGGAGCTGCTCTACAGCGAAGATTTCAG CGAGCCGGCTTTGATCGCCTCGCTGTCGGGTAAGCGTCGCCGTCCCGAGTGGGAGTTCGACTACGACACCAGCTACAAGC TACTGCTGGAACAGTTCGGCACCAAAGATCTCTACGGCTTTGGCCTGGGGGAAGTCAGGTTATCGCTACAGGCGGCCGGC TGTCTTATCCAGTATGTGAAAGATACCCAGCGTACCGCCCTGCCCCATATCAACGCCATCACCCGCTTCAATCAGTGCGA CAGCATAGTGCTGGATGCGGCCACCCGTAAGAATCTGGAGCTGACCCGCAACCTGCAAGGCGGTAGCGACAACACCCTGG CCTCGGTACTGGATAACACGGCAACTCCCATGGGCAGCCGTATGTTGCAGCGCTGGATCCACGAGCCGCTGCGCAACCAC AACATCATCCGCGCCCGTCATGATGCCATAGACGAGCTGCTGGACAACGGCTATCACGAGAGCCTGCATGAACAGCTAAA AGCCCTCGGCGACATAGAACGTATCACGGCGCGTCTGGCCATTCGTAGTGCCCGCCCGCGTGACTTTGCCCGTCTGCGTC AGGCCCTGGCCCTGCTGCCCGAGATACAGCAGCAGCTGGCAGACTGCAACAGCCCTCACCTCAAGGCGCTATCGAGTCAC CTGGGCGACTTCCCCGAGGAGCATGCCCTGCTAAGCCGCGCCATCGTCGACAATCCGCCTATGCTGATCCGCGACGGCGG CGTGATCAAAGAGGGTTATCACAACGAGCTGGATGAATGGCGCAAACTCAGCCAGGGCGCGACCGACTACCTCGCCGAGC TGGAAGCCCGGGAGAAGGCAGCCACCGGCGCCTCGACTCTGAAGGTGGGCTACAACCGGGTGCACGGCTACTACATAGAG GTGAGTCGCCGCGAGTCGGATCTGGTGCCTATGAGCTACCAGCGCAGACAAACCCTTAAGAACACCGAGCGTTACATAGT CGCCGAGCTTAAAGAGCATGAGGAGAAGGTACTCTCCAGTCAGGGCAAGGCGCTGGCGCTGGAGAAACAGCTGTGGGAAG AGCTGTTCGATCTATTGATGCCGCGCCTGCACGAGCTACAGGCCTTCGCCCGCGCGGCAGCGGAGCTTGATGTGATCACC AACTTTGCCGAGCGCGCCGAGCAGCTCGATTATCACAGACCGGAACTCACGGCCCAGAGCGGCATACATATCGAGGCGGG AAGACACCCAGTGGTCGAGCGCGTCAGTCAGACGCCGTTTATCGCCAACCCTGTCAGCCTCAACCCGGCAAGGCGCATGC TGATCGTTACCGGCCCTAACATGGGCGGTAAGTCGACCTATATGCGCCAGGTGGCTCTGATCACCCTTATGGCCCATATA GGTAGCTTCGTACCGGCCCAGAAGGCCGCCATAGGCCCAGTGGATCGAATCTTTACCCGTATTGGCGCGGCAGACGATCT CGCCTCCGGCCGCTCGACCTTCATGGTGGAGATGACGGAAACCGCCAACATACTACATAACGCGACGCCCGAGAGCCTGG TATTGATGGATGAGATTGGCCGCGGCACCTCGACCTATGATGGCTTGTCGCTGGCCTGGTCCGCCGCCGAGCATCTGGCG CAGAACTTAAAATCTATGACCCTGTTTGCCACCCACTATTTTGAGCTAACCCAGCTGCCGGATCAGATGGAAAATGTGGC CAACGTGCACCTCGACGCCATAGAGCATGACGACACCATCGCCTTCATGCACGCGGTGCAGGAAGGTGCGGCGAGTAAGA GTTATGGCCTTCAAGTCGCGGCGCTGGCTGGTGTTCCGGCCAAGGTGGTGCAGGCAGCCAAGCACAAGCTGCATCATCTT GAGAGCCGGGATAGAGAGGAGGAGCTCCCTGAACTGAGACAGGCCCAGCTGAGCATGACCATGCCGGAGACCTCAAAGGC GCTGGACAGGTTAGATACCATAGATCCCGACAGCCTGACGCCGAGACAGGCGCTGGATCTTCTCTATGAGCTCAAGCAGC TACGCTAA Protein sequence : MNAVDTQYLEKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPIPMAGIPYHAVEG YLAKLVQLRVSVAICEQIGDPATTKGPVERKIVRIVTPGTLTDEALLQERQDNLLAAVYHGKVGFGYATLDVSSGRFVVT ELASKEALEAELQRTNPAELLYSEDFSEPALIASLSGKRRRPEWEFDYDTSYKLLLEQFGTKDLYGFGLGEVRLSLQAAG CLIQYVKDTQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGSDNTLASVLDNTATPMGSRMLQRWIHEPLRNH NIIRARHDAIDELLDNGYHESLHEQLKALGDIERITARLAIRSARPRDFARLRQALALLPEIQQQLADCNSPHLKALSSH LGDFPEEHALLSRAIVDNPPMLIRDGGVIKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLKVGYNRVHGYYIE VSRRESDLVPMSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWEELFDLLMPRLHELQAFARAAAELDVIT NFAERAEQLDYHRPELTAQSGIHIEAGRHPVVERVSQTPFIANPVSLNPARRMLIVTGPNMGGKSTYMRQVALITLMAHI GSFVPAQKAAIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPESLVLMDEIGRGTSTYDGLSLAWSAAEHLA QNLKSMTLFATHYFELTQLPDQMENVANVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPAKVVQAAKHKLHHL ESRDREEELPELRQAQLSMTMPETSKALDRLDTIDPDSLTPRQALDLLYELKQLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shew_1214 | YP_001093343.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 67 |
