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Name : Shew_1187 (Shew_1187) Accession : YP_001093316.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : riboflavin biosynthesis protein RibD Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0117 EC number : 1.1.1.193 Position : 1379520 - 1380680 bp Length : 1161 bp Strand : + Note : KEGG: she:Shewmr4_1096 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein DNA sequence : ATGGCGATGAGCATGGCCTGGTCCAAATTTGATTCCCAGATGATGGCGCGTGCCATTAAGTTGGCCCGCAAGGGGCAATA CACCACCAGTCCCAACCCTAATGTCGGCTGCGTAATAGTCCAAGGGGAGACCCTGGTGGGTGAAGGATTTCATATCGCCG CCGGCGGCCCCCACGCCGAGGTGCACGCGCTGCGTATGGCTGGCGATAAGGCCAAAGGCGCCACCGCCTATGTAACCTTA GAGCCCTGTAGCCATTATGGCCGAACGCCGCCCTGCGCCGAGGCGCTGATCAAAGCTGAGGTTTCCCGCGTGGTGGTGGC GGTGACCGACCCTAATCCTCAGGTATCTGGCCGTGGCATCAAGATGCTCCAAGATGCAGGCATTCTCGTCGAGGTGGGTC TGCACCAGGAAGAGGCCGCAGCACTCAACCCAGGCTTCATGAAGCGGATGCGCAGCGGCCTGCCTTGGGTCGGCATCAAG CTTGCGACCAGCCTGGATGGTAAGACGGCGCTCTCTAACGGCGTCTCTAAGTGGATCACAGGGCCAGAGGCGCGCCGTGA CGTGCAGCGTATGCGCGCCCGTTTCGATGCCGTCGTGACCGGCATAGAGACGGTACTGGCCGACGACCCTAGCCTGAATG TACGTCATCTGGAGCTTGGCAGCCTGTCCGAGCAGTTAACCGAGGCCGACATTCGTCAGCCACTTCGCGTGGTGCTCGAC TCCCGCGCGCGCCTAGGTGCCAAGGCAAAACTGTTTGAGACACAATCCCCCGTGCTGCTGGTGAGCTGTCAGCCCTATCC CGAGGCCGTGGCGAGCGCCTGGCCCGAGCAGGTGAGTCAGTTGCAACTGCCAAGCGACAATGGGCAGGTGCCGCTAAAGG CGCTGCTGGAACATCTGGGATCTCAGCTTAACAGCGTGATGGTCGAGGCTGGGGCGACCCTGGCCGGCGCCTTCATGGCG CAGGGGCTGGCGGACGAGCTGGTGCTGTATCAGGCGCCGAAAATCTTAGGCGGCCATGGCCGTAACCTGCTGGCACTGCC GGACTATACTGAGATGACGCAGCTGCCTGCGCTCAAGCTTTGCGACGAGCGTGCGATCGGGGCCGACAGACGCCTCACCT TTCAATTGAGTCACAATCATTTACCGAGCGATAAAGAGTAG Protein sequence : MAMSMAWSKFDSQMMARAIKLARKGQYTTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHALRMAGDKAKGATAYVTL EPCSHYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQDAGILVEVGLHQEEAAALNPGFMKRMRSGLPWVGIK LATSLDGKTALSNGVSKWITGPEARRDVQRMRARFDAVVTGIETVLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLD SRARLGAKAKLFETQSPVLLVSCQPYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHLGSQLNSVMVEAGATLAGAFMA QGLADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLCDERAIGADRRLTFQLSHNHLPSDKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00289 | YP_008207754.1 | Pyrimidine deaminase | Not tested | AbaR25 | Protein | 5e-73 | 52 |
| BJAB0868_00293 | YP_008211619.1 | Pyrimidine deaminase | Not tested | AbaR26 | Protein | 5e-73 | 52 |
