Gene Information

Name : Shew_1117 (Shew_1117)
Accession : YP_001093247.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : N-acetylglucosamine-6-phosphate deacetylase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1820
EC number : 3.5.1.25
Position : 1291843 - 1292973 bp
Length : 1131 bp
Strand : +
Note : KEGG: sdn:Sden_2704 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase

DNA sequence : 
ATGAAACAGACACTGATTGCCGAGCGAGTATTTGACGGCGAACACTTCCACCATAACCAGGCCATCACCATAGAGGACGG
GCGTATCGTCTCTTTCGATAGGGCTAGCGATGTCGAGCCGATTCTGCTGGCCGGCACCCTGGTGCCTGGCTTTATCGATG
TTCAGGTCAATGGCGGCGGCGGTGCCCTGTTTAACGACGCACCCAGCGTCGAGAAGATAAAGACCATAGGCCAGGCCCAT
GCCAGATTTGGCACCACGGGCTTCCTGCCGACCCTGATCACCGACGAAATTGAGGTGATGCGCGCCGCCGCCGATGCGGT
GGCCGAGGCGCTGGCGCTGAATACGCCAGGCGTGCTGGGGATCCATTTCGAGGGGCCGCATCTCAGCGTGCCCAAGAAGG
GTGTCCATCCGGCCAATTATATTCGTCGTATCTCTGATGAAGAGCTGGCGGTTTTTGCCCGTAATGATCTGGGGACTAAG
GTGGTGACACTGGCGCCTGAGAACGTCGCACCAGAGGTGATTCATGCCCTGGTCGAGTGCGGCGTCAGGGTTTGTCTCGG
TCACTCTAATGCCGACTATGACACTGTTATTAAGGCGCTTGAGGCCGGGGCAACCGGTTTTACCCACCTGTTTAACGCCA
TGTCGCCCATGGATTCCAGGGCGCCGGGCATGGTGGGCGCGGCGCTGGAGAGCCAGGATGCCTGGTGCGGCCTGATTGTC
GATGGTCACCACGTGCATCCGGCCTCGGCTAAGGTAGCCATCGCCGCTAAGCCAAGGGGCAAGGTGATGCTGGTGACAGA
CGCCATGCCGCCTGTGGGCATGGATGATAACGCCAGCTTCGAGCTGTTTGGCACCCAGGTGGTGCGCCGCGGTGACAGGT
TAAATGCCGTAACCGGCGAGCTTGCCGGATGCGTGCTGGATATGATTGGTGCGGTCAACAACAGCGTTAGCATGCTAGGC
GTGGCCCACGAAGAGGCGCTGCGGATGGCGGCTAGATATCCTGCCGAGTTTATCGGTCATCGTCAGCGCGGAGTGTTTAC
CATAGGCGCCAGGGCGGATATGGTGTTGCTGGGCAGCGATAATCAAGTGGCGCGCACCTACATAGATGGCCAGTTGGTCT
ATCAGGCATAG

Protein sequence : 
MKQTLIAERVFDGEHFHHNQAITIEDGRIVSFDRASDVEPILLAGTLVPGFIDVQVNGGGGALFNDAPSVEKIKTIGQAH
ARFGTTGFLPTLITDEIEVMRAAADAVAEALALNTPGVLGIHFEGPHLSVPKKGVHPANYIRRISDEELAVFARNDLGTK
VVTLAPENVAPEVIHALVECGVRVCLGHSNADYDTVIKALEAGATGFTHLFNAMSPMDSRAPGMVGAALESQDAWCGLIV
DGHHVHPASAKVAIAAKPRGKVMLVTDAMPPVGMDDNASFELFGTQVVRRGDRLNAVTGELAGCVLDMIGAVNNSVSMLG
VAHEEALRMAARYPAEFIGHRQRGVFTIGARADMVLLGSDNQVARTYIDGQLVYQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1783 NP_231418.1 N-acetylglucosamine-6-phosphate deacetylase Not tested VPI-2 Protein 5e-47 41
nagA-2 YP_001217323.1 N-acetylglucosamine-6-phosphate deacetylase Not tested VPI-2 Protein 5e-47 41
nagA ACA01848.1 N-acetylglucosamine-6-phosphate deacetylase Not tested VPI-2 Protein 3e-47 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_1117 YP_001093247.1 N-acetylglucosamine-6-phosphate deacetylase VFG1116 Protein 2e-47 41