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Name : rplS (Shew_1066) Accession : YP_001093196.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : 50S ribosomal protein L19 Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0335 EC number : - Position : 1227279 - 1227629 bp Length : 351 bp Strand : + Note : this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site DNA sequence : ATGAATAACATCATTAAAATGCTCAACGATGAGCAAATGAAGCAAGACGTACCAGAATTTGGTGCAGGTGACACAGTAGT TGTAAAAGTACGTGTTGTTGAAGGCGGTAAAGAGCGTCTACAGGCGTTCGAAGGCGTTGTTATCGCTAAGCGTAACCGTG GTCTGCACTCTGCATTCACTGTACGTAAGATCTCTAATGGCGAAGGTGTTGAGCGTGCGTTCCAAACTCACAGCCCGCTC ATCTCTAGCATCGAAGTTAAGCGTCGCGGCCGTGTTCGTCGTGCTAAGCTTTACTACCTACGTGAGCGTTCAGGTAAGTC TGCACGTATCCGCGAGAAGCTTGCTAAGTAA Protein sequence : MNNIIKMLNDEQMKQDVPEFGAGDTVVVKVRVVEGGKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQTHSPL ISSIEVKRRGRVRRAKLYYLRERSGKSARIREKLAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rplS | AAS66827.1 | 50S ribosomal subunit protein | Not tested | SSR-1 | Protein | 1e-33 | 78 |
| rplS | CAA68924.1 | ribosomal protein L19 | Not tested | Internalin | Protein | 6e-23 | 59 |
