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Name : tcdR (CD630_06590) Accession : YP_001087134.1 Strain : Clostridium difficile 630 Genome accession: NC_009089 Putative virulence/resistance : Unknown Product : alternative RNA polymerase sigma factors Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 786521 - 787075 bp Length : 555 bp Strand : + Note : Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 18480323,16677313,16439101, 16207902, 15673503, 12654792,12202595,10669352; Product type r : regulator DNA sequence : ATGCAAAAGTCTTTTTATGAATTAATTGTTTTAGCAAGAAATAACTCAGTAGATGATTTGCAAGAAATTTTATTTATGTT TAAGCCATTAGTAAAAAAACTTAGTAGAGTTTTACATTATGAAGAGGGAGAAACAGATTTAATAATATTTTTTATTGAAT TAATAAAAAATATTAAATTAAGTAGCTTTTCAGAAAAAAGCGATGCTATTATAGTCAAATATATTCATAAATCATTACTG AATAAGACTTTTGAGTTGTCTAGAAGATATTCTAAAATGAAGTTTAATTTTGTAGAATTTGATGAAAATATCTTAAATAT GAAAAATAATTATCAAAGTAAGTCTGTTTTTGAGGAAGATATTTGTTTTTTCGAATATATTTTGAAAGAATTATCTGGTA TTCAAAGAAAAGTTATTTTTTATAAATATTTAAAAGGATATTCTGATAGAGAAATATCAGTGAAATTAAAAATATCTAGA CAAGCTGTTAATAAGGCTAAAAATAGAGCATTTAAAAAAATAAAAAAAGACTATGAAAATTATTTTAACTTGTAA Protein sequence : MQKSFYELIVLARNNSVDDLQEILFMFKPLVKKLSRVLHYEEGETDLIIFFIELIKNIKLSSFSEKSDAIIVKYIHKSLL NKTFELSRRYSKMKFNFVEFDENILNMKNNYQSKSVFEEDICFFEYILKELSGIQRKVIFYKYLKGYSDREISVKLKISR QAVNKAKNRAFKKIKKDYENYFNL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tcdD | CAA63561.1 | - | Virulence | PaLoc | Protein | 5e-72 | 100 |
