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Name : CD630_05060 (CD630_05060) Accession : YP_001086980.1 Strain : Clostridium difficile 630 Genome accession: NC_009089 Putative virulence/resistance : Unknown Product : Reverse transcriptase/maturase/endonuclease,Group II intron Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : 2.7.7.49 Position : 596830 - 598659 bp Length : 1830 bp Strand : + Note : Evidence 1a : Function experimentally demonstrated in the studied strain; PubMedId : 12568329,12568327,17650959, 11157942, 11073898, 8863741; Product type e : enzyme DNA sequence : ATGACAGTCAAAGTTAGTAACAAAAAGGCACTGAGGTTCAATGAGTATTACGATACTCAGAAAATTCAAGACGAACTCTA TCAATTATCTGCCGAAGGCAGTCATGTGTTTAGAGATTTAATGAGCTATATCACACAAGAAGAAAATATTTTATTGGCTT ATCGAAATATCAAAAGCAATAAAGGCAGTAAAACTGCTGGAACAAATAAAAGAACGATTATTGATGTTGGTGAAGAAAAC CCATATCAATTAGTTCAATACGTTCAAAATCGATTTAACAACTTTCAACCTCACTCCATCAGAAGAGTCGAGATTCCAAA GCCAAATGGTAAAACCAGACCGCTAGGAATCCCAACAATTGAGGATAGATTAGTACAGCAATGCATAAAGCAGATCCTTG AACCAATTTTGGAAGCAAAATTCCATAAGCATTCTTATGGATTTCGACCAGAAAGAAGTTCGCACCATGCCATAGCGATA TTTCAGCAATGGACATTTAAAGGATTTCACTATGTAGTGGACATTGATATTAAGGGCTTCTTTGACAATGTAAATCATGG AAAATTGCTTAAGCAACTCTGGACAATGAAAATTCGAGACAAGACATTTATTTCAATATTGTCGAGAATGCTTAAGGCAG AGGTAAAAGGCATTGGAAAATCAACCAAAGGAACCCCACAAGGTGGTATTCTTTCTCCTCTTTTAGCTAATGTGGTGCTA AACGAATTAGATTGGTGGATAGATAGTCAGTGGGACGGATTTCCAACCAAAAGAAAATACAGTAGTCTGCTGAGTAAAAC TCAATCAATAAGAAAGTATTCAAACTTGAAAGAAATCAAAATTGTCCGTTACGCAGATGATTTCAAAATCATGTGCAAAG ATTATCATACTGCCCAGAAAATTTTCCTCGCAACAAAACAATGGTTAAAAGTACGACTTGATTTAGACATAAGTCCTGAA AAGTCAAAAGTAACTAATCTGAGAAAAAATTATTCTGACTTTCTAGGATTCAAGTTGAAAGTGAAAAAAGGAAAAGCAAA CGGATATACCAATCGAAGCCGAATGTGTGATAAGGCAAAGATTAATGCGGTAGATAAACTAAAGAACAATATCAAAACAA TCGCCGCTAATCCAACTGTAGATAATGTCAATAAGTACAACTCTGTTGTTCTAGGTTTGCATAACTATTATAAAATTGCG ACTCTGGTCAACTTAGATTTTGTAGATATTGCTTTCACAGTAAATAAAAGTCTTGATTGTCGAACCAAAAATATTCGCAA TAAGCACGGAACGCTAACCAGTACCTATCAAAAATTCTATAAACAATATAACTGGAAGAAACGATTCATAGCGAACATGA TTTTATTTCCAATAGCCGGGATAAAATTTACAATGCCAAGAATCTTTCCGAAGGACTGGAATCGATATACGCCTGAAGGT AGGCTGTTTATTCATCAAAGATTAAAGATGGATATGCATACCGTTTATTACCTGCTGGAAAATTCCAATCCGAATAAGTC TGTAGAATTTAACGATAATCGAATCTCTCTGTTCATAGCCCAACAAGGAAAATGTCATGTTAGTGGTGAAAATTTATCAA AAGATAATATGGAAGTTCATCACATTAAGCCGTTATCACTTGGTGGGAATGATAACTATAAGAATCTTGTGATTGTTACA AAAGAAACACACAAATTGATTCATGCGACTAAAAGAGAAACGATAGTTCATTATTTACCTTTGGTATTAAAAAAGGAAAG ATCATTGGAAAAGCTGAATAAATTACGTGCTTTAGCTGGGAATAGTGAAATAGAAATGAATTACTGTTGA Protein sequence : MTVKVSNKKALRFNEYYDTQKIQDELYQLSAEGSHVFRDLMSYITQEENILLAYRNIKSNKGSKTAGTNKRTIIDVGEEN PYQLVQYVQNRFNNFQPHSIRRVEIPKPNGKTRPLGIPTIEDRLVQQCIKQILEPILEAKFHKHSYGFRPERSSHHAIAI FQQWTFKGFHYVVDIDIKGFFDNVNHGKLLKQLWTMKIRDKTFISILSRMLKAEVKGIGKSTKGTPQGGILSPLLANVVL NELDWWIDSQWDGFPTKRKYSSLLSKTQSIRKYSNLKEIKIVRYADDFKIMCKDYHTAQKIFLATKQWLKVRLDLDISPE KSKVTNLRKNYSDFLGFKLKVKKGKANGYTNRSRMCDKAKINAVDKLKNNIKTIAANPTVDNVNKYNSVVLGLHNYYKIA TLVNLDFVDIAFTVNKSLDCRTKNIRNKHGTLTSTYQKFYKQYNWKKRFIANMILFPIAGIKFTMPRIFPKDWNRYTPEG RLFIHQRLKMDMHTVYYLLENSNPNKSVEFNDNRISLFIAQQGKCHVSGENLSKDNMEVHHIKPLSLGGNDNYKNLVIVT KETHKLIHATKRETIVHYLPLVLKKERSLEKLNKLRALAGNSEIEMNYC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 1e-111 | 47 |
| ef0012 | AAM75218.1 | EF0012 | Not tested | Not named | Protein | 9e-79 | 41 |
