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Name : lysS (CD630_35520) Accession : YP_001090075.1 Strain : Clostridium difficile 630 Genome accession: NC_009089 Putative virulence/resistance : Virulence Product : lysyl-tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 4152690 - 4154219 bp Length : 1530 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12762020, 7576245; Product type e : enzyme DNA sequence : ATGAAAAATAATCAACAAAGCAATGAAGAAGCGCAAATTCAAGAAGACCTTAGTGAAGTACTTCAAGTAAGAAGAGATAA ACTAAAAAAATTACAAGAGTCAGGTAGAGATCCTTTTAAAGAAAGTAGATATGATAGAACGCATTATTCTATGGATATAA AAGATAACTTTGATTCTCTTGAGGGTAAAACTACAAAAATAGCAGGACGTATAATGAGCAAGAGAATACAAGGGAAAGCT GGCTTTATAGATATTCAAGACCAAGAGGGAAGAATCCAATCTTATGTAAGACTAGATGCTATAGGAGAGGAAGAATATAG TGTATTTTCAACATATGATATTGGAGATATAGTTGGAATTGAAGGAGAAATCTTTAAAACTAAAAAAGGTGAAATATCTG TAAAGGCTAAATCTGTAGTATTACTATGTAAATCTTTACAAGTTTTACCAGAAAAATATCATGGATTAAAAGACCAAGAA CTAAGATATAGACAAAGATATGTTGACTTAATAGTAAATCCAGAAGTAAAAAATGCTTTTTTAATTAGAACAAAAGCATT AAAAGCATTAAGAGCATACTTAGATGATAGAGGATTTTTAGAAGTTGAGACTCCAATATTAAATACTATAGCAGGTGGGG CAAATGCTAGACCATTTATAACTAATCATAATACTTTACATATACCAATGTATTTAAGAATAGCGAATGAATTGTATTTA AAAAGACTTATTGTTGGTGGATTTGATAAAGTTTATGAAATGGGAAGAATGTTTAGAAATGAAGGTATGGATTTAAAACA TAATCCTGAATATACTGCAATAGAATTATATCAAGCATATGCAGACTATACTGATATGATGGAAATAACAGAAAATGTTA TTGCACATATGGCTGAAGTTGCTACAGGAAGTATGATAGTTAACTATCAAGGAACAGAAATAAACTTTACACCACCTTGG AAAAGAATGAGTATGGAAGATTGTGTTAAAGAATATTCTGGTGTAGATTTTTCTACTATAAATACAGATGAAGAGGCACT AGAAGTTGCTAGAGAAAAAGGTATAGAGATAAAACCTGGAATGAGAAGAGGAGAAGTAATAAATGCTTTCTTTGAAGAAT TTGGAGAAGATAAATTAATCCAACCAACATTTATAACTCATCATCCAGTTGAAGTATCTCCATTATCTAAGAGAAATGTT GAAGACCCAAGAAGAACTGATAGATTTGAGGCATTTGCTAATAAGTGGGAGTTAGCTAATGCATTTTCTGAACTTAATGA CCCTATTGACCAAAAAGGAAGATTTATAGACCAATTAAGAAAAAGAGAATTAGGTGATGATGAAGCTTTTGAAATGGATG AAGATTTCTTAAAAGCATTAGAGGTAGGTCTACCTCCTACAGGAGGACTAGGAATAGGTATAGATAGAGTAATTATGTTA TTAACTAACTCTCCATCTATAAGAGATGTATTATTATTCCCGACTATGAAACTTATTGATAACAATTCAAATAAAGAAGA AGAAAACTAA Protein sequence : MKNNQQSNEEAQIQEDLSEVLQVRRDKLKKLQESGRDPFKESRYDRTHYSMDIKDNFDSLEGKTTKIAGRIMSKRIQGKA GFIDIQDQEGRIQSYVRLDAIGEEEYSVFSTYDIGDIVGIEGEIFKTKKGEISVKAKSVVLLCKSLQVLPEKYHGLKDQE LRYRQRYVDLIVNPEVKNAFLIRTKALKALRAYLDDRGFLEVETPILNTIAGGANARPFITNHNTLHIPMYLRIANELYL KRLIVGGFDKVYEMGRMFRNEGMDLKHNPEYTAIELYQAYADYTDMMEITENVIAHMAEVATGSMIVNYQGTEINFTPPW KRMSMEDCVKEYSGVDFSTINTDEEALEVAREKGIEIKPGMRRGEVINAFFEEFGEDKLIQPTFITHHPVEVSPLSKRNV EDPRRTDRFEAFANKWELANAFSELNDPIDQKGRFIDQLRKRELGDDEAFEMDEDFLKALEVGLPPTGGLGIGIDRVIML LTNSPSIRDVLLFPTMKLIDNNSNKEEEN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-98 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001090075.1 | lysyl-tRNA ligase | VFG1668 | Protein | 3e-98 | 47 |
