|
Name : xynD (CD630_30690) Accession : YP_001089583.1 Strain : Clostridium difficile 630 Genome accession: NC_009089 Putative virulence/resistance : Unknown Product : PTS system xyloside-specific transporter subunit IID Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG3716 EC number : - Position : 3564043 - 3564852 bp Length : 810 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 20406496, 17183209, 11679321, 11160802,10954012; Product type t : transporter DNA sequence : ATGAGTGATAAGGTATCATTAAATAAATCAAATGAAAAGGTGAAAAAAAGTGTCTTATGGCGCTGGTTTTTTACTAGTTC TGTTTCTTCAAATTATGAGAAGATGCAGGCCTTGGCATACTGTTATGCAGTACTACCTTTTTTAAAAGTAGTATACAAAG ATAATCCAGAAAAGTTACAAAGTGCTGTATTAAATCATTTACAATTTTTTAACACTAATCCTTGGGTTGCCCCTTATATT TTGGGTATTAATGTAGCAATGGAGGAGTTATCAAGTGAAGAGACTGAAGAGGCTGTTGCTTCAATTAAAACAGGCTTGAT GGGACCAGTAGCAGGTTTAGGAGATAGTTTATTTGTCGTTATTCCGTGGACAATTTTTGGAGCTATAGCAGCTAATATGG CGATAGATGGAAGTCCATTTGGAATCTTACTGTGGATTGTAGTGAGTGTAGCATTGAAATTATTAAGTATACCACTATTT AATGCTGGTTATACATCAGGTACTAAGCTAATATCTTCAATTGAAAAAAGTTTAAAGATTTTAACTGAGAGTACATCTAT TTTAGGTTTAATGGTTGTAGGTGCATTAATACCTTCAGTTGTAAAAGCTAATGTTGCTTTGAACTTTCAACAAGGTGATT TTACAATGAAAGGTCAAGAAATATTAGACCAAATTATGCCTGGATTAGTTCCTGCAATTCTAGTTGTGATTGTTTATTGG GCTCTTAAAAAGAATATAAAACCTATATACTTAATTTTAGGAGTAATGGTTGTTTCAATAATTTTATATGCATTAGGTAT TTTAAAATAA Protein sequence : MSDKVSLNKSNEKVKKSVLWRWFFTSSVSSNYEKMQALAYCYAVLPFLKVVYKDNPEKLQSAVLNHLQFFNTNPWVAPYI LGINVAMEELSSEETEEAVASIKTGLMGPVAGLGDSLFVVIPWTIFGAIAANMAIDGSPFGILLWIVVSVALKLLSIPLF NAGYTSGTKLISSIEKSLKILTESTSILGLMVVGALIPSVVKANVALNFQQGDFTMKGQEILDQIMPGLVPAILVVIVYW ALKKNIKPIYLILGVMVVSIILYALGILK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF0553 | NP_814323.1 | PTS system transporter subunit IID | Not tested | Not named | Protein | 2e-99 | 86 |
| ef0079 | AAM75283.1 | EF0079 | Not tested | Not named | Protein | 1e-99 | 86 |
