|
Name : xynB (CD630_30680) Accession : YP_001089582.1 Strain : Clostridium difficile 630 Genome accession: NC_009089 Putative virulence/resistance : Unknown Product : PTS system xyloside-specific transporter subunit IIB Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG3444 EC number : 2.7.1.69 Position : 3563541 - 3564023 bp Length : 483 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 20406496, 17183209, 11679321, 11160802,10954012; Product type t : transporter DNA sequence : ATGGAAATGAAAGGTATTAAAAATATTCGTATAGATGACCGTTTAATCCATGGTCAAGTTGCAACTATGTGGAGTAATAA ATTGGGTGTTACAAGATTAATGGTAGTAAATGATGCAGTAGCTAACAATTCTGTTCAAAAACAAGTTTTAAGAATGGCTA CACCTGCAGGTATAGCGTCATCTATAATTACAGAAGAGACTGCTATAAAAAATATTACTGCAGGAAAGTATGAAGGACAA AATGTATTATTAATTGTTAAGTCTCCTGTGGACCTTATTCCATTTGTAGAGGCAGGATTTAAAATACATAATATAAATGT AGGAAATATGTCAAGTAGAAAAGATACAACAGTTCTAAGACCTAATATCAGTGTTACTGAAGAAGAGAAAGAAGCATTTA AAAGACTTTTAGATGAAGGAATTGAAATTACAACTATAATGACGCCTGATGATAAGAAAACTTATCTTGTAGACATCTTA TAG Protein sequence : MEMKGIKNIRIDDRLIHGQVATMWSNKLGVTRLMVVNDAVANNSVQKQVLRMATPAGIASSIITEETAIKNITAGKYEGQ NVLLIVKSPVDLIPFVEAGFKIHNINVGNMSSRKDTTVLRPNISVTEEEKEAFKRLLDEGIEITTIMTPDDKKTYLVDIL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF0554 | NP_814324.1 | PTS system transporter subunit IIB | Not tested | Not named | Protein | 9e-59 | 80 |
| ef0080 | AAM75284.1 | EF0080 | Not tested | Not named | Protein | 6e-59 | 80 |
