Gene Information

Name : CD630_23080 (CD630_23080)
Accession : YP_001088823.1
Strain : Clostridium difficile 630
Genome accession: NC_009089
Putative virulence/resistance : Virulence
Product : HTH-type transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 2671428 - 2671628 bp
Length : 201 bp
Strand : +
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11839496, 11292341; Product type r : regulator

DNA sequence : 
ATGCCCAAATTCATTTGTAACCTAAAAAAATATAGACAATTAAAAGAATTAACTCAAGAACAATTAGCAGAAAAAGTAGG
AGTTAGAAGAGAAACCATTATGCGTTTAGAAGCAGGAAAGTATAATCCTTCTTTGAAATTAGCAATAGATATATCAAAAA
TAGTAGATACACCTATTGATGAATTGTTTATTTTTGATTAG

Protein sequence : 
MPKFICNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELFIFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 4e-06 43
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 3e-06 43
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 2e-07 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD630_23080 YP_001088823.1 HTH-type transcriptional regulator VFG2175 Protein 1e-06 43
CD630_23080 YP_001088823.1 HTH-type transcriptional regulator VFG2168 Protein 1e-06 43