|
Name : CD630_01450 (CD630_01450) Accession : YP_001086614.2 Strain : Clostridium difficile 630 Genome accession: NC_009089 Putative virulence/resistance : Unknown Product : S1 RNA-binding domain-containing protein Function : - COG functional category : - COG ID : - EC number : - Position : 193217 - 195358 bp Length : 2142 bp Strand : + Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 18321528, 16997528; Product type pf : putative factor DNA sequence : TTGGATATAAATCAAATCTTAAAAAAAGAGTTTAATCTTAGAGATGAACAAATAAATAATACATTAAAACTTATTGATGA AGGAAATACAATACCATTTATAGCTAGATATAGAAAAGAAATGACTGGCGAGATGAGTGATGTTACACTAAGAGAATTTT ATGAAAAACTAATGTATTTGAGAAATCTTCAAAGTAGAAAAGATGATGTAGTTAGACTAATAGATGAACAAGGGAAATTA ACAGATGAAATAACACAAAATATAGAAAAAGCAAAAACATTACAAGAAGTAGAAGATATATATGCTCCATATAAACAAAA GAAAAGAACTAGAGCAACAATAGCAAAAGAAAAAGGATTAGAAAATTTAGCATTGTCAATACTAGAGAATAATTTAGATA ATATAGAAATAGAGGCAAAGAATTATCTTGATGAAGAGAAAGAAGTTCTTTCTATTGAAGATGCTCTAAAAGGTGCTAGA GATATAATTGCAGAACTAGTCTCAGATGATGCTAAGATTAGAAAGTATATAAGAGAATTAGCTTTAAGAGAAGGTATGAT AGTTAGCAAAAGTGCTACTGATGAGAAATCGGTTTATGATATGTATTATGATTATAGCGAAGCAGTAAAAAGTATGGCTC CACATAGAGTTTTGGCAATAAACAGAGGAGAAAAAGAAAGCTTCCTAAAGGTTAAGTTGGAAATAAATAATGATAAAGTT TTAAATTACATAATAAACGAATATGTAAATGATAAAAATTTCAAAAATAAAGAAGAAATCGTAAGTTCAATAGAAGATTC TTATAAAAGATTAATTTTCCCATCAATAGAAAGAGAAATAAGAAATCATTTAACAGAAATAGCTCAAGAAAGAGCTATAA GTGTATTTGGAAAGAATGTTAAAAGTTTATTGCTTCAACCACCAGTTAAAGACAAAGTAGTTATGGGATTTGACCCTGCA TTTAGAACTGGATGTAAAATAGCTGTAGTAGATAAAAATGGTAAACTACTAGATTATACAACAGTATATCCAACAGACCC TCAAAATGATGTAGAGGGAGCAAAGAAAGTTTTAAAAGGATTGATTGAAAAATACGATATAGATATAATTTCAATTGGAA ATGGTACTGCATCTAGAGAATCAGAAACTTTTGTATCAGAAATGATAAAAGAAATAGATAGCGAAGTGCAGTATGTGATA GTTAGTGAAGCAGGAGCATCTGTTTATTCAGCATCTGAACTTGCAAATGAGGAACATCCAGATATAAATGTATCAATAAG AGGAGCTATATCTATAGCTAGAAGATTACAAGACCCATTAGCAGAGCTTGTAAAAATAGACCCTAAAAGTATTGGTGTTG GTCAATATCAGCATGATTTAAACAAAAAGAGATTAGAAGAAGTACTAGATGGAGTTGTTGAAGATTCTGTAAATAGTGTT GGAGTAGATTTAAATACTGCATCATACTCCCTACTAGAACATGTTGCAGGAATAAGTAAAGCTATAGCAAAAAATATAAT AGCATATAGAGAAGAAAATGGAGATTTTACGTCAAGAGCACAATTGAAAAAAGTAAAAAGACTAGGACCTCAAGCATTTA CTCAATGTGCTGGATTTATGAGAATCTTAGAGGGTAAAAATCCACTAGATAATACAGGTGTGCATCCTGAAAGTTATGAT ATATGTAAAAAAATGATTGAGATAATTGGATATTCTTTAGATGATGTAAAGAATAAGAATATAGGTGAAATAGATGAAAA AATAAAAGAAATTGGCTTGAGAGAATTAAGTGAAAAACTGGAAGTAGGACAAGTTACATTAAAAGATATTATAGCTGAAA TCAAAAAACCAGGAAGAGACCCAAGAGAAGAAGGTATAAAACCTATACTTAGAACTGATGTCTTAAAAATTGAAGATATA CAAGAGGGTATGACTTTAAAAGGTACAATAAGAAATGTTGTAGACTTTGGTGCATTTGTAGATATTGGAATAAAAAATGA CGGATTAGTTCATAAATCAGAAATGAGTAATAGTTTTGTGAAAGACCCTATGAGTATTGTTACAGTAGGTGATATAGTAG ATGTAAAAGTCATTGGAATTGACTTAAACAAAAAAAGAGTTGCCTTATCAATGAAAAAATAG Protein sequence : MDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGEMSDVTLREFYEKLMYLRNLQSRKDDVVRLIDEQGKL TDEITQNIEKAKTLQEVEDIYAPYKQKKRTRATIAKEKGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALKGAR DIIAELVSDDAKIRKYIRELALREGMIVSKSATDEKSVYDMYYDYSEAVKSMAPHRVLAINRGEKESFLKVKLEINNDKV LNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSIEREIRNHLTEIAQERAISVFGKNVKSLLLQPPVKDKVVMGFDPA FRTGCKIAVVDKNGKLLDYTTVYPTDPQNDVEGAKKVLKGLIEKYDIDIISIGNGTASRESETFVSEMIKEIDSEVQYVI VSEAGASVYSASELANEEHPDINVSIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDLNKKRLEEVLDGVVEDSVNSV GVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQAFTQCAGFMRILEGKNPLDNTGVHPESYD ICKKMIEIIGYSLDDVKNKNIGEIDEKIKEIGLRELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDI QEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGDIVDVKVIGIDLNKKRVALSMKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 6e-134 | 44 |
