Gene Information

Name : CD630_19610 (CD630_19610)
Accession : YP_001088467.1
Strain : Clostridium difficile 630
Genome accession: NC_009089
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : 3.6.3.-
Position : 2260732 - 2261397 bp
Length : 666 bp
Strand : +
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 17135193, 11781802, 18504552, 18952792,8384683; Product type t : transporter

DNA sequence :
ATGAGTATTTTACAAGTAATTAATTTAAAGAAATATTATGGACAAAGTTCAAACATTACAAAAGCTCTTGATGGTGTAAC
TCTATCTATTGAAAAAGGCGAATTTATTTCTATTGTAGGTACATCTGGTAGTGGCAAATCCACATTATTAAATATGATGG
GAGGATTAGATAATCCTACATCTGGAAAGGTTATTATAAAGGGTAAGGAATTATCTACTATGTCTGATGAACAGCTTACA
ATCTTTAGACGCAGAAATATAGGTTTTATATTTCAAAATTATAATCTTGTTCCTTTACTTAATGTATATGAAAATATTAT
CTTACCAATAGGATTGGATGGAGAGACCATAGATAAGGATTTTATAAATGAAATTATAAATATGCTTTCTCTTGAAGAAA
AATTATATGATATGCCAAGTAATCTTTCTGGTGGTCAACAGCAACGTGTTGCTATAGCTAGAGCACTTGTAACAAAACCA
GCTATTATACTAGCTGATGAACCAACAGGTAACCTTGATAGTAGAACTAGTTCAGATGTACTGAGTTTACTTAAAGTGAC
AAGTAAAAAATTCAACCAAACAATTGTAATGATTACACACAATAATGAAATTGCACAACTAACTGATAGAATTATTCGTA
TTGAAGATGGAAAAATTGTTAACTAG

Protein sequence :
MSILQVINLKKYYGQSSNITKALDGVTLSIEKGEFISIVGTSGSGKSTLLNMMGGLDNPTSGKVIIKGKELSTMSDEQLT
IFRRRNIGFIFQNYNLVPLLNVYENIILPIGLDGETIDKDFINEIINMLSLEEKLYDMPSNLSGGQQQRVAIARALVTKP
AIILADEPTGNLDSRTSSDVLSLLKVTSKKFNQTIVMITHNNEIAQLTDRIIRIEDGKIVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-36 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-37 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-37 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-37 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD630_19610 YP_001088467.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-84 77
CD630_19610 YP_001088467.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-61 59
CD630_19610 YP_001088467.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-38 45