|
Name : lysS (A1S_0998) Accession : YP_001084032.1 Strain : Acinetobacter baumannii ATCC 17978 Genome accession: NC_009085 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1155657 - 1156943 bp Length : 1287 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTTAAACCGTGGTTCTTTCATGGTGATTCAAGACATGACTGGTCGTATCCAATTATATGTTGACCGTAAAGGTTTACC AAAAGATACGCTTGAAACTATTAAAGGTTTAGACCTTGGCGATATTATTGCTGCTGAAGGTTATATCGGTCGTTCTGGCA AAGGTGACTTATATGTACACCTTGAAGGTTTTGAACTTCTTACAAAATCGCTTCGTCCATTGCCGGATAAATTTCATGGT TTGAACGACACAGAAGTTAAATATCGTAAGCGTTATCTTGACTTAATTGTGAATGAAGAAACGCGTAAGACTTTTGAAAT TCGTGCCAAAGTCGTTGCAGGTATTCGCGCATTTTTAACCAATGAACGTTTCATGGAAGTTGAAACGCCAATGATGCATG TGATTCCGGGTGGTGCGTCTGCACGTCCGTTTGAGACGCATCATAATGCTTTAGATATGCCATTATTCTTACGTATCGCA CCAGAGCTTTATTTAAAACGTTTAGTTGTTGGTGGTTTTGAGCGTGTGTTTGAAATTAACCGTAACTTCCGTAATGAAGG GGTATCAACACGTCATAACCCTGAATTTACCATGATCGAGTTTTATCAGGCATATGCTGATTATAAAGACTTGATGGCTT TGACTGAAAACATGCTTGAAAAGCTAGCAATTGATATTTTAGGTACGACTGATGTGCCTTACCAAGGCGAAGTGTTTAGC TTTAAAGGGCCATTCAAGAAAATCTCTATGTTTGATGCGATTTTGGAGAATAATCCGCAGTTCACGCCTGAAAATGTAGG CGATCGTGAATTCCTTGCAAAATTTGTTCGTGAGGAATTAAAAGAAGAAGTTAAACCTGGTTTTGGTTTAGGTAAGCTTC AAACAATCGTATTTGAAGAAACGGTTGAGACTAAACTTCGTCAGCCTACTTTTATTACTGAGTACCCAGCAGAGACTTCT CCACTTGCTCGCCGTAATGATGATAATCCGCACATTACTGATCGTTTTGAGTTCTTTATTGGTGGCCGTGAATTGGCAAA CGGCTTTAGTGAGTTAAATGATCCGATTGATCAGGCTGAACGTTTCCAAGCGCAAGTTGCTGAAAAAGATGCTGGTGATG ATGAAGCAATGCATTACGATGCAGAGTTTGTTGAAGCACTTGAATATGGTTTACCTCCAACAGCGGGTGAAGGTATTGGT ATTGACCGTTTGGTTATGCTTTTTGCAGATGCACCAAGTATTCGTGATGTGATTTTGTTCCCGCATATGCGTCGTAAAGA AGGTTAA Protein sequence : MLNRGSFMVIQDMTGRIQLYVDRKGLPKDTLETIKGLDLGDIIAAEGYIGRSGKGDLYVHLEGFELLTKSLRPLPDKFHG LNDTEVKYRKRYLDLIVNEETRKTFEIRAKVVAGIRAFLTNERFMEVETPMMHVIPGGASARPFETHHNALDMPLFLRIA PELYLKRLVVGGFERVFEINRNFRNEGVSTRHNPEFTMIEFYQAYADYKDLMALTENMLEKLAIDILGTTDVPYQGEVFS FKGPFKKISMFDAILENNPQFTPENVGDREFLAKFVREELKEEVKPGFGLGKLQTIVFEETVETKLRQPTFITEYPAETS PLARRNDDNPHITDRFEFFIGGRELANGFSELNDPIDQAERFQAQVAEKDAGDDEAMHYDAEFVEALEYGLPPTAGEGIG IDRLVMLFADAPSIRDVILFPHMRRKEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-122 | 60 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 4e-81 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001084032.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-122 | 60 |
