Gene Information

Name : A1S_3117 (A1S_3117)
Accession : YP_001086116.1
Strain : Acinetobacter baumannii ATCC 17978
Genome accession: NC_009085
Putative virulence/resistance : Resistance
Product : tetA efflux pump
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 3599812 - 3600900 bp
Length : 1089 bp
Strand : -
Note : -

DNA sequence :
ATGACGCATAGCACTCATATTTCTATATATATGGGTATATTGGCCAGTCTCTATGCGGCCATGCAATTTATCTTCTCTCC
TTTATTAGGTGCGTTAAGTGACAGATGGGGGCGTAGACCGGTCTTGCTTATTTCACTGGCTGGGTCAGCAGTTAATTATC
TCTTTCTAACTTTTTCACATAGCCTAATTTTATTGCTAGTAGGTCGCATTATTGCTGGAATCACCAGTGCCAACATGGCT
GTTGCAAGTGCTTATATTGTCGATGTTTTGCACGAAAATAACCGCGCAAAATATTTTGGTTTAATCAATGCTATGTTTGG
TGCAGGCTTCATTATTGGCCCTGTATTGGGCGGATTCTTGAGTGAATATGGATTAAGACTTCCTTTCTTTGCGGCAGCTA
TATTGACAGGGCTTAATCTTTTATCTGCCTATTTTGTTTTGCCTGAAACCCGACGGGTGACATCAGAGGGTAAGCAATTA
TCTACATTAAATCCTTTTAAAATATTTGCTGGAATTAGTTCAATTCGCGGCGTACTTCCATTTGTTATGACCTTTTTTAT
CTTTAGTGCGATAGGGGAGGTGTATGGAGTTTGCTGGGCATTATGGGGACATGACACATTTCAGTGGAGCGGTTTCTGGG
TAGGGCTTTCTCTAGGCGCATTTGGTTTATGTCAAATGTTGGTACAGATTTTTATTCCGAGTCATGCTTCAAGATTACTG
GGTAATCGTAATGCCGTGCTAATCGGTATTGCTTGTTCCTGTTTGGCTTTAGCAGTAATGGCTTTTGCTCAAAGTGGTTG
GATGATTTTTGCCATTATGCCTATTTTTGCGTTAGGGAGTATGGGTACACCTTCATTGCAAGCATTAGCTTCTCAAAAGG
TTTCTGCTGACCAGCAAGGACAGTTCCAGGGAGTGATAACTTCTACGGTAAGCTTGGCCTCTATGATAGCCCCTTTGTTT
TTCTCAACTCTTTATTTTCAATTTCAGAAAAAATGGCCGGGAGCAATTTGGTTAAGTGTAATTTTAATTTACCTGATTAC
TTTACCTATCATTTTGTATAGTACCCAACCGGTCGAACAACAAAGATAG

Protein sequence :
MTHSTHISIYMGILASLYAAMQFIFSPLLGALSDRWGRRPVLLISLAGSAVNYLFLTFSHSLILLLVGRIIAGITSANMA
VASAYIVDVLHENNRAKYFGLINAMFGAGFIIGPVLGGFLSEYGLRLPFFAAAILTGLNLLSAYFVLPETRRVTSEGKQL
STLNPFKIFAGISSIRGVLPFVMTFFIFSAIGEVYGVCWALWGHDTFQWSGFWVGLSLGAFGLCQMLVQIFIPSHASRLL
GNRNAVLIGIACSCLALAVMAFAQSGWMIFAIMPIFALGSMGTPSLQALASQKVSADQQGQFQGVITSTVSLASMIAPLF
FSTLYFQFQKKWPGAIWLSVILIYLITLPIILYSTQPVEQQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 3e-57 42
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 3e-57 42
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 4e-57 42
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 3e-57 42
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 3e-57 42
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 3e-57 42
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 1e-53 41
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 1e-53 41
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 1e-53 41
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 1e-53 41
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 1e-53 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A1S_3117 YP_001086116.1 tetA efflux pump NC_009085.4918440.p0 Protein 1e-157 100
A1S_3117 YP_001086116.1 tetA efflux pump NC_011595.7059241.p0 Protein 4e-151 96
A1S_3117 YP_001086116.1 tetA efflux pump NC_010410.6003291.p0 Protein 5e-151 96
A1S_3117 YP_001086116.1 tetA efflux pump NC_011586.7043399.p0 Protein 1e-150 95
A1S_3117 YP_001086116.1 tetA efflux pump AY264780.2.gene3.p01 Protein 5e-69 46
A1S_3117 YP_001086116.1 tetA efflux pump AF090987.gene.p01 Protein 4e-59 45
A1S_3117 YP_001086116.1 tetA efflux pump NC_011586.7045189.p0 Protein 3e-57 42
A1S_3117 YP_001086116.1 tetA efflux pump Y19114.gene.p01 Protein 3e-58 42
A1S_3117 YP_001086116.1 tetA efflux pump AF133139.gene.p01 Protein 8e-54 42
A1S_3117 YP_001086116.1 tetA efflux pump AY743590.gene.p01 Protein 2e-63 42
A1S_3117 YP_001086116.1 tetA efflux pump AF534183.gene.p01 Protein 2e-57 42
A1S_3117 YP_001086116.1 tetA efflux pump NC_010410.6002597.p0 Protein 2e-57 42
A1S_3117 YP_001086116.1 tetA efflux pump CP001485.1.gene2821. Protein 2e-57 42
A1S_3117 YP_001086116.1 tetA efflux pump NC_010410.6002612.p0 Protein 8e-54 41
A1S_3117 YP_001086116.1 tetA efflux pump AF133140.gene.p01 Protein 8e-54 41
A1S_3117 YP_001086116.1 tetA efflux pump X75761.gene.p01 Protein 9e-57 41