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Name : A1S_3117 (A1S_3117) Accession : YP_001086116.1 Strain : Acinetobacter baumannii ATCC 17978 Genome accession: NC_009085 Putative virulence/resistance : Resistance Product : tetA efflux pump Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 3599812 - 3600900 bp Length : 1089 bp Strand : - Note : - DNA sequence : ATGACGCATAGCACTCATATTTCTATATATATGGGTATATTGGCCAGTCTCTATGCGGCCATGCAATTTATCTTCTCTCC TTTATTAGGTGCGTTAAGTGACAGATGGGGGCGTAGACCGGTCTTGCTTATTTCACTGGCTGGGTCAGCAGTTAATTATC TCTTTCTAACTTTTTCACATAGCCTAATTTTATTGCTAGTAGGTCGCATTATTGCTGGAATCACCAGTGCCAACATGGCT GTTGCAAGTGCTTATATTGTCGATGTTTTGCACGAAAATAACCGCGCAAAATATTTTGGTTTAATCAATGCTATGTTTGG TGCAGGCTTCATTATTGGCCCTGTATTGGGCGGATTCTTGAGTGAATATGGATTAAGACTTCCTTTCTTTGCGGCAGCTA TATTGACAGGGCTTAATCTTTTATCTGCCTATTTTGTTTTGCCTGAAACCCGACGGGTGACATCAGAGGGTAAGCAATTA TCTACATTAAATCCTTTTAAAATATTTGCTGGAATTAGTTCAATTCGCGGCGTACTTCCATTTGTTATGACCTTTTTTAT CTTTAGTGCGATAGGGGAGGTGTATGGAGTTTGCTGGGCATTATGGGGACATGACACATTTCAGTGGAGCGGTTTCTGGG TAGGGCTTTCTCTAGGCGCATTTGGTTTATGTCAAATGTTGGTACAGATTTTTATTCCGAGTCATGCTTCAAGATTACTG GGTAATCGTAATGCCGTGCTAATCGGTATTGCTTGTTCCTGTTTGGCTTTAGCAGTAATGGCTTTTGCTCAAAGTGGTTG GATGATTTTTGCCATTATGCCTATTTTTGCGTTAGGGAGTATGGGTACACCTTCATTGCAAGCATTAGCTTCTCAAAAGG TTTCTGCTGACCAGCAAGGACAGTTCCAGGGAGTGATAACTTCTACGGTAAGCTTGGCCTCTATGATAGCCCCTTTGTTT TTCTCAACTCTTTATTTTCAATTTCAGAAAAAATGGCCGGGAGCAATTTGGTTAAGTGTAATTTTAATTTACCTGATTAC TTTACCTATCATTTTGTATAGTACCCAACCGGTCGAACAACAAAGATAG Protein sequence : MTHSTHISIYMGILASLYAAMQFIFSPLLGALSDRWGRRPVLLISLAGSAVNYLFLTFSHSLILLLVGRIIAGITSANMA VASAYIVDVLHENNRAKYFGLINAMFGAGFIIGPVLGGFLSEYGLRLPFFAAAILTGLNLLSAYFVLPETRRVTSEGKQL STLNPFKIFAGISSIRGVLPFVMTFFIFSAIGEVYGVCWALWGHDTFQWSGFWVGLSLGAFGLCQMLVQIFIPSHASRLL GNRNAVLIGIACSCLALAVMAFAQSGWMIFAIMPIFALGSMGTPSLQALASQKVSADQQGQFQGVITSTVSLASMIAPLF FSTLYFQFQKKWPGAIWLSVILIYLITLPIILYSTQPVEQQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 3e-57 | 42 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 3e-57 | 42 |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 4e-57 | 42 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 3e-57 | 42 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 3e-57 | 42 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 3e-57 | 42 |
| tet(G) | AAK02051.1 | tetracycline resistance protein | Not tested | SGI1 | Protein | 1e-53 | 41 |
| tetA(G) | ABZ01843.1 | TetA(G) | Not tested | SGI2 | Protein | 1e-53 | 41 |
| tetA(G) | AGK06974.1 | TetA(G) | Not tested | SGI1 | Protein | 1e-53 | 41 |
| tetA(G) | AGK07104.1 | TetA(G) | Not tested | SGI1 | Protein | 1e-53 | 41 |
| tetA | CAJ77034.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 1e-53 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | NC_009085.4918440.p0 | Protein | 1e-157 | 100 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | NC_011595.7059241.p0 | Protein | 4e-151 | 96 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | NC_010410.6003291.p0 | Protein | 5e-151 | 96 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | NC_011586.7043399.p0 | Protein | 1e-150 | 95 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | AY264780.2.gene3.p01 | Protein | 5e-69 | 46 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | AF090987.gene.p01 | Protein | 4e-59 | 45 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | NC_011586.7045189.p0 | Protein | 3e-57 | 42 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | Y19114.gene.p01 | Protein | 3e-58 | 42 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | AF133139.gene.p01 | Protein | 8e-54 | 42 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | AY743590.gene.p01 | Protein | 2e-63 | 42 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | AF534183.gene.p01 | Protein | 2e-57 | 42 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | NC_010410.6002597.p0 | Protein | 2e-57 | 42 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | CP001485.1.gene2821. | Protein | 2e-57 | 42 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | AF133140.gene.p01 | Protein | 8e-54 | 41 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | NC_010410.6002612.p0 | Protein | 8e-54 | 41 |
| A1S_3117 | YP_001086116.1 | tetA efflux pump | X75761.gene.p01 | Protein | 9e-57 | 41 |
