Gene Information

Name : BMA10247_0018 (BMA10247_0018)
Accession : YP_001079600.1
Strain :
Genome accession: NC_009080
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 18463 - 19206 bp
Length : 744 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCGAATTCTCATCGCCGAAGACGACAGCATACTAGCGGACGGCCTCACCCGGTCACTCCGCCAATCGGGCTATGCCGT
CGATCACGTGAGGAACGGCGTCGAGGCCGACACGGCCCTGTCGATGCAGACTTTCGACCTGCTGATCCTCGATCTCGGCC
TGCCCAGAATGTCCGGCCTCGAGGTGCTGCGCCGCCTGCGCGCGCGCAACTCGAACCTGCCCGTGCTGATCCTGACGGCC
GCCGACAGCGTCGACGAGCGCGTGAAAGGGCTCGACCTGGGCGCCGACGACTACATGGCGAAGCCGTTCGCGCTCAACGA
ACTCGAGGCGCGCGTGCGCGCGCTGACGCGGCGCGGCGCGGGAGGCGGGCCGACCGTCGTGCGGCATGGCTTGCTGTCGT
TCGACCAGGTCGGCCGGATCGCCTATGCGAACGAACGCGTGCTCGAGCTGTCCGCGCGCGAGCTCGGGCTGCTCGAGGTG
CTGCTGCAGCGCATCGGCCGGCTGGTGTCGAAGGAGCAGCTCGTCGATCACCTGTGCGAATGGGGCGAGGAAGTCAGCAA
CAACGCGATCGAGGTCTACGTCCACCGGCTGCGCAAGAAGATCGAGCCGAGCGGCGTGCGGATCACGACCGTGCGCGGCC
TCGGCTACTGCCTCGAGAAAGCCGCGCCCGCGGGCGCGAGCGACGCGCCGAACGCCGCCGCGTCGCCGGCGGCCGAGGCC
GTCGCCGGCCAGCCGGTGCGCTAG

Protein sequence : 
MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLEVLRRLRARNSNLPVLILTA
ADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGAGGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEV
LLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEPSGVRITTVRGLGYCLEKAAPAGASDAPNAAASPAAEA
VAGQPVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-37 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BMA10247_0018 YP_001079600.1 DNA-binding response regulator BAC0487 Protein 3e-36 45
BMA10247_0018 YP_001079600.1 DNA-binding response regulator BAC0083 Protein 2e-35 45
BMA10247_0018 YP_001079600.1 DNA-binding response regulator BAC0638 Protein 5e-29 44
BMA10247_0018 YP_001079600.1 DNA-binding response regulator BAC0347 Protein 3e-33 42
BMA10247_0018 YP_001079600.1 DNA-binding response regulator NC_002516.2.879194.p Protein 8e-31 42
BMA10247_0018 YP_001079600.1 DNA-binding response regulator BAC0308 Protein 1e-30 41
BMA10247_0018 YP_001079600.1 DNA-binding response regulator CP001138.1.gene1939. Protein 9e-29 41
BMA10247_0018 YP_001079600.1 DNA-binding response regulator BAC0197 Protein 9e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BMA10247_0018 YP_001079600.1 DNA-binding response regulator VFG1390 Protein 5e-36 44
BMA10247_0018 YP_001079600.1 DNA-binding response regulator VFG0473 Protein 7e-40 44
BMA10247_0018 YP_001079600.1 DNA-binding response regulator VFG0475 Protein 8e-29 41