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Name : sctV (BMA10247_A0635) Accession : YP_001077836.1 Strain : Genome accession: NC_009079 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein SctV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 588192 - 590264 bp Length : 2073 bp Strand : + Note : identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 DNA sequence : ATGACGCTGAAATCCCTCAAACTTCCCGCCGGCGGCGAGGTCGGCATCACGGTGCTCGTCGTCGCGATCGTCTCGCTGAT GATCCTGCCGCTGCCGCCCGAGGTGATCGACGTGCTGCTCGGCGTGAACATCGCGATCAGCGTCACGCTGCTGATGGTGA CGATGTACGTCGGCAGCATCGTGTCGCTGTCGGTGTTCCCGTCGATCCTGCTGTTCACGACGCTGTACCGGCTGTCGCTG AACATCGCGTCGACGAAATCGATCCTGCTGCACGCGAACGCGGGCGACATCATCGAGAGCTTCGGCGAGCTCGTCGTCGG CGGCAATCTCGTCGTCGGCCTCGTCGTGTTCCTGATCATCACGATCGTGCAGTTCATCGTGATCGCGAAGGGCTCGGAGC GCGTGGCCGAAGTCGGCGCGCGCTTCACGCTCGACGCGATGCCGGGCAAGCAGATGAGCATCGACGCGGATCTGCGCGCG AACATCCTGACGCCGGACGAGGCGCGCCGCAAGCGCGCGACGCTCGCCAAGGAAAGCCAGTTGCACGGCGGGATGGACGG CGCGATGAAGTTCGTCAAGGGCGACGCGATCGCCGGGCTCATCATCACGCTCGTGAACATCGTCGCGGGCATCGCGATCG GCGTGATGTACCACGGGATGACGGCGGGGGACGCCGCGAACCGCTTCTCGATCCTGTCGGTCGGCGATGCGATGGTGTCG CAGATTCCGTCGCTGCTGATCTCGGTCGCGGCCGGCGTGATGATCACGCGCGTCGCCGACGATCACGACGACGGCGACGG CACGTCGCTCGGCTCGGAGATCGCCAGGCAACTGGGCGGCAGCCATCGCGCGCTGTATTTCGCCGCGGTGCTGCTGATCG GCTTCGCGGCGGTGCCCGGCTTTCCGGCCGCGCTCTTCGTGCTGCTGTCGGGCATGCTCGCGTTCGCCGGCTACCGGCTG CAAAAGGGCGCGCGGCGCACGACCGCGCGCGGCGAGCCGGTGATCGCGCTGCAGCGCGCGGGCGCGAAGAGCAGCACGCC GTCGATTCTGCCGCGCGCGCCGCTATTCACCTGCGCGATCGGCGTGCGCGTCGCGCCCGATCTCGTCGCCCGGCTCGCGC CCGCCGCGCTCGACCGCGCGTTCGACGAGGAGCGCGCGAAGCTGCAGGAAGAACAGGGGCTGCCGTTTCCCGGCATCACG CTGTGGACGAGCGACGCGCTGCCCGCGTCGACGTGCGAGATCCTGATGCGCGACGTGCCGCAGGCGCGGCTCGAGTTGCC GGCCGACCAGACGATGCTGCCCGACGCGGCGTCGGACCCGGCGCTCGCCGGCCGCTGCACGAAGCGCGGGCCCGCGGGCG GCCTCGCCGAGAGCTACTGGATCGACGACAAGGCGGTGCCGGCCGGCGCGCGCGCGTGGCGCGCCGAGCAGGTGGTCGCG CACGAGACGATCGCGCTGCTCAGGCGCAATGCGCACCTGTTCCTGGGTATTCAGGAAGCCCAATGGATACTCGACCAGCT CGGCGTCGATTATCCGGGGCTCGTCGCCGAAGTGCAGAAGACGCTGCCGACGCAGCGCATCGCCGACGTGCTGCGCCGCC TGCTCGAGGAACACATTCCGATCCGCAACGCGCGCGACATCATGGAGAGCCTCGTCGCATGGGGGCCGAAGGAGAAGGAC ATGCTGATGCTCGCCGAGTACGTGCGCGGCGACCTGTCGCGCTATCTCGCCTATCGCGCGGCGCGCGGCGCGCGGCAGTT GCCCGCCGTGCTGCTCGACATGGCGGTCGAGCAGCACATCCGGCAGTCGATCAAGCAGACGCCCGCGGGCAACTTTCTCG CGCTGCCGCCCGAGCAGGTGCGCTATCTCGTCGACAGCATCGCGTCGTTCGTCGGCGAAGCGCCGCGCGACGATGTCGCG CTCGTCACGTCGATGGACGTGCGCCGCTACACGCGGCGCATGATCGAGGCGCGGCTCGACTGGCTGCCCGTCTATTCGTA TCAGGAGCTCGGCGACCAGGTGCAGTTGCAGCCGGTCGGCCGCGTGACGATGCCGACGGCGGCCCACGCATGA Protein sequence : MTLKSLKLPAGGEVGITVLVVAIVSLMILPLPPEVIDVLLGVNIAISVTLLMVTMYVGSIVSLSVFPSILLFTTLYRLSL NIASTKSILLHANAGDIIESFGELVVGGNLVVGLVVFLIITIVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRA NILTPDEARRKRATLAKESQLHGGMDGAMKFVKGDAIAGLIITLVNIVAGIAIGVMYHGMTAGDAANRFSILSVGDAMVS QIPSLLISVAAGVMITRVADDHDDGDGTSLGSEIARQLGGSHRALYFAAVLLIGFAAVPGFPAALFVLLSGMLAFAGYRL QKGARRTTARGEPVIALQRAGAKSSTPSILPRAPLFTCAIGVRVAPDLVARLAPAALDRAFDEERAKLQEEQGLPFPGIT LWTSDALPASTCEILMRDVPQARLELPADQTMLPDAASDPALAGRCTKRGPAGGLAESYWIDDKAVPAGARAWRAEQVVA HETIALLRRNAHLFLGIQEAQWILDQLGVDYPGLVAEVQKTLPTQRIADVLRRLLEEHIPIRNARDIMESLVAWGPKEKD MLMLAEYVRGDLSRYLAYRAARGARQLPAVLLDMAVEQHIRQSIKQTPAGNFLALPPEQVRYLVDSIASFVGEAPRDDVA LVTSMDVRRYTRRMIEARLDWLPVYSYQELGDQVQLQPVGRVTMPTAAHA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-138 | 59 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-138 | 59 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-136 | 59 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 5e-135 | 59 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-135 | 59 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 3e-136 | 58 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-135 | 58 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 5e-97 | 42 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-119 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctV | YP_001077836.1 | type III secretion inner membrane protein SctV | VFG0064 | Protein | 9e-124 | 44 |
| sctV | YP_001077836.1 | type III secretion inner membrane protein SctV | VFG0198 | Protein | 3e-108 | 43 |
| sctV | YP_001077836.1 | type III secretion inner membrane protein SctV | VFG0384 | Protein | 3e-121 | 42 |
