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Name : yscF (BURPS1106A_A2092) Accession : YP_001076125.1 Strain : Genome accession: NC_009078 Putative virulence/resistance : Virulence Product : type III secretion system needle protein Function : - COG functional category : - COG ID : - EC number : - Position : 2055310 - 2055579 bp Length : 270 bp Strand : + Note : identified by match to protein family HMM TIGR02105 DNA sequence : ATGAGCAATCCCCCGACCCCGCTGCTGACCGACTACGAGTGGTCAGGCTACCTGACCGGCATCGGCCGCGCGTTCGACGA CGGCGTGAAGGATCTGAACAAGCAGTTGCAGGACGCGCAGGCGAACCTCACGAAAAACCCGAGCGATCCGACCGCGCTCG CCAACTATCAGATGATCATGTCCGAATACAACCTGTACCGGAACGCGCAGAGCAGCGCGGTCAAATCGATGAAGGACATC GATTCGTCGATCGTCTCGAACTTCCGCTAA Protein sequence : MSNPPTPLLTDYEWSGYLTGIGRAFDDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKSMKDI DSSIVSNFR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prgI | AAX49613.1 | PrgI | Virulence | SPI-1 | Protein | 3e-17 | 56 |
| prgI | NP_457267.1 | pathogenicity 1 island effector protein | Virulence | SPI-1 | Protein | 5e-17 | 56 |
| prgI | NP_806476.1 | pathogenicity island 1 effector protein | Virulence | SPI-1 | Protein | 5e-17 | 56 |
| prgI | YP_217792.1 | cell invasion protein | Virulence | SPI-1 | Protein | 4e-17 | 56 |
| prgI | NP_461794.1 | needle complex major subunit | Virulence | SPI-1 | Protein | 4e-17 | 56 |
| ECs3718 | NP_311745.1 | EprI | Not tested | LIM | Protein | 1e-17 | 55 |
| ysaG | AAS66835.1 | YsaG | Not tested | SSR-1 | Protein | 1e-14 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscF | YP_001076125.1 | type III secretion system needle protein | VFG2466 | Protein | 6e-36 | 99 |
| yscF | YP_001076125.1 | type III secretion system needle protein | VFG0535 | Protein | 1e-17 | 56 |
| yscF | YP_001076125.1 | type III secretion system needle protein | VFG0996 | Protein | 4e-15 | 50 |
