Gene Information

Name : sciM (BURPS1106A_A0136)
Accession : YP_001074179.1
Strain :
Genome accession: NC_009078
Putative virulence/resistance : Virulence
Product : SciM protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 119983 - 120465 bp
Length : 483 bp
Strand : +
Note : identified by match to protein family HMM PF05638

DNA sequence :
ATGTCGCACGACATTTTCCTCAAGATCAACGGTATCGATGGCGAGGCGGAAGACGCAACCCACAAGAGCGAAATCGAGGT
CTTGAGCTGGTCGTGGAACGTCAGTCAGCAATCGAACATGCACCTGGGTTCGGGGGGCGGCGCGGGCAAGGCGACGATCG
ATGATCTGCAGTTCGAACATTACATCGATCGCGCGAGCCCGAATCTCGTTCAATACTGCTTGCTCGGCAAGCATATCGAC
GAAGCCCGGCTCGTGGTGCGTAAGGCGGGCGGCAGCCCGCTCGAATACATCAAGCTCACGATGAGCGATGTGCTCGTTAC
GCAGGTGAGCCCGGCAGGCGTGGCTCAGGACGAATCGCGCCCGCGTGAGCTCGTTCGGCTGTCGTTCTCGCGCCTGAAGC
AAGAGTATGTCGTCCAGAACCCGCAGGGCGGCAGCGGCGGCGCAATCACCGCGACTTTCGACATCAAGAAGAACGCGGCG
TAA

Protein sequence :
MSHDIFLKINGIDGEAEDATHKSEIEVLSWSWNVSQQSNMHLGSGGGAGKATIDDLQFEHYIDRASPNLVQYCLLGKHID
EARLVVRKAGGSPLEYIKLTMSDVLVTQVSPAGVAQDESRPRELVRLSFSRLKQEYVVQNPQGGSGGAITATFDIKKNAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0302 NP_454882.1 conserved hypothetical protein Not tested SPI-6 Protein 3e-47 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sciM YP_001074179.1 SciM protein VFG2071 Protein 3e-24 44