Gene Information

Name : yscR (BURPS668_A2000)
Accession : YP_001062995.1
Strain :
Genome accession: NC_009075
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1937623 - 1938273 bp
Length : 651 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGGTACAGTTCAGTGACATCACCGGGCTGCTGCTCGTTGTCATCGCAATCAGCTTGTTGCCGTTCATTGCGATGGTCGT
GACGTCGTATGCGAAGATCGTCGTCGTGCTGGGGCTTCTGCGCAACGCGCTCGGCGTGCAACAGGTTCCGCCCAATATGG
TTCTCAACGGGATCGCGATTCTGGTATCGCTCTACGTGATGGCACCTATCGGCATGCAGGCGGCGAAGGCGCTCGACGAA
CAACAGCTCGCCTCGCAGTCCTCCCAGGCCATCATCCAAGCGCTCGGTTCAGCACGCGAACCGTTCCGATCGTTTCTCGA
GAAACACACTCCCGAGCGCGAAAAACGCTTCTTTATTCGTTCCGCTTCCGTCATCTGGCCGAAGGAAGAAGCATCGCTTC
TGAACGAGCGCGACCTCATCGTTCTCGCACCGGCGTTCGCGCTATCGGAGTTGACCGACGCGTTCAAGATCGGCTTTCTG
CTGTACATCGTGTTCATCATCGTCGATCTGGTGATCGCCAATGTGCTCCTGGCGCTGGGGCTCAACCAGATCACGCCGAC
CAACGTCGCCATACCATTCAAGCTGCTGCTGTTCGTTGCCATGGACGGTTGGTCCACGCTCATCCACGGCTTGGTCATGA
CTTACAAATGA

Protein sequence : 
MVQFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQAAKALDE
QQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFL
LYIVFIIVDLVIANVLLALGLNQITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTYK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-63 70
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-62 69
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-67 69
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-66 68
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-66 68
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-66 68
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-66 68
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-66 68
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-42 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-34 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 9e-29 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 9e-29 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-37 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-37 41
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-37 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-37 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-37 41
escR AAC31528.1 L0049 Virulence LEE Protein 4e-37 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-37 41
escR AAK26700.1 EscR Virulence LEE Protein 3e-37 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-36 41
escR AAL57527.1 EscR Virulence LEE Protein 3e-37 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-37 41
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscR YP_001062995.1 type III secretion system protein VFG0188 Protein 7e-46 48
yscR YP_001062995.1 type III secretion system protein VFG0394 Protein 8e-45 47
yscR YP_001062995.1 type III secretion system protein VFG0044 Protein 8e-41 45
yscR YP_001062995.1 type III secretion system protein VFG1012 Protein 2e-32 43
yscR YP_001062995.1 type III secretion system protein VFG0827 Protein 2e-37 41