|
Name : BURPS668_A1997 (BURPS668_A1997) Accession : YP_001062992.1 Strain : Genome accession: NC_009075 Putative virulence/resistance : Virulence Product : HrcV family type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1933538 - 1935655 bp Length : 2118 bp Strand : + Note : identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 DNA sequence : ATGTTCAAATCGCTGAAACTGCCCGCGGGCGGTGAAATCGGAATCGTCGCCCTGGTCATCGCGATCATCTCGCTGATGAT ACTGCCGCTGCCGCCAGTCGCGATCGACCTGCTGCTCGGCATCAACATCACCATCAGCGTGACGCTGCTGATGGTGACGA TGTACGTTCCGGATATCGCCGCGCTATCCGCGTTTCCGTCGCTCCTGCTGTTCACGACGCTGTTCCGGCTGTCGCTCAAC ATCGCGTCCACCAAGTCAATCCTGCTGCATGCGGAAGCGGGCAACATTATCGAGAGCTTTGGCCAGCTGGTGGTGGGCGG CAACCTCGTCGTGGGCCTGGTCGTATTCGCCATCATCACGACCGTGCAATTCATCGTGATCGCGAAAGGCTCCGAGCGTG TTGCGGAAGTCGGCGCCCGCTTCACGCTGGATGCGCTTCCGGGCAAGCAGATGAGCATCGACGCCGATTTGCGCTCCGGC CTGCTGAGCACCGAGGAGGCACGGAAGAAGCGCGCGACGCTGGCGGTCGAAAGCCAATTGCACGGCGGGATGGATGGCGC GATGAAATTCGTCAAGGGCGACGCGATCGCTGGTCTCATCATCACGATGATCAACATCGTCGCGGGCATTGCGGTCGGCG TTGCATATCACGGAATGTCGGCGGGCGACGCGGCAAACCGCTTCTCCGTATTGTCCGTCGGCGACGCGATGGTGTCGCAG ATTCCGTCCCTGTTGCTCTCCGTCGCGGCAGGCGTGATGATCACGCGCGTCACCGACGAGCGCGCGCCGAAGCGGCGCTC GCTCGGCGATGAAATCAGCCACCAGCTCGGCTCGAGCGCGCGCGCATTGTATTTCGCAGCGTTTCTTCTGCTCGGCTTCG CCGCCGTGCCGGGCTTTCCCGCGGCACTGTTCGTGCTGCTTGCCGCCGCGCTCGCGTTCGCCGGCCATCGACTGTCACGA AAGGGTTCGCCATCGTCCGGCGCCGCTCGCGGACAAGAGCAGGAGGCGCTGCGTGCGATGCAGCGTTCGGGCGCCAAGGC GGACGTCCCTCCGATCCTGCCGCGCGCGCCTCAGTTCGCTTGCGCCGTCGGCGTTCGGATCGCGCCGGATCTCGCGTCCG GTCTTGCGTTGCCGAGGCTCGACGAAGCGCTCGACCTCGAGCGTGCACGCCTGCAGGACGAACTCGGGCTTCCTTTTCCC GGCGTGACGATGTGGATCCATCCGACGCTCGCGGCAGCAACCTTCGAAGTGCTGATCCACGACGTGCCGCATCTTTCCGT CACGCTTCCGGCTCGCAAGGCGATGCTGCCGCAGCAAAGGCATCTGTCGCCCGCTCACGCCGCGCTGACGGACGAGCAAA AGGCGCGGCACCGGGATTTGATCGAACGGAGCGAAGCCGGCCCGCCGATCGACGCAAGCGGCCAAGCGACCCACTGGATC GACGAGCCGGCGGTCACCGCGAAGGACAGCGTATGGCGCGCAGAACAGATCATCGCGTACGCATCCGTGGCGGCGATCCG CACTCACGCACCGCTTTTTGTCGGCATCCAGGAAGTGCAGTGGATACTCGATCAGTTGGGCGCCGACTCCCCGGGCCTCG TCGCCGAAGTGCTGAAGATCTTGCCGTCGACGCGCATTGCCGATGTGCTACGCCGCCTGCTTGAAGAGCAGATATCGATC CGCAACGTGCGAACGATCATGGAAAGTCTGGTCGCATGGGGCGCGAAGGAGAAAGACATGCTGATGTTGACCGAATACGT GCGCGGCGACCTGTCGCGCTTTCTCGCCCATCGAGCCGCGCAAGGCGAACGCGTGTTGTCCGCGGTCCTGTTCGACCTGC AGGCGGAACAGCACATCCGCCAGGCGATCAAGCAAACGCCGACAGGCAATTTCCTCGCACTGCCCCCGGACGACGCATCG CGGCTTGTCGATCGCATTCAGTCGCTCGTCGGCGCGAACGCCCGCACGGACATCGCGCTCGTCACCTCGATGGACATTCG CCGCTATGTACGACGAATGATCGAGCGACGCATCGACTGGCTAGCCGTGTATTCGTATCAAGAGCTCGGCGAACACGTCG AGCTGCGTCCGGTCGGCCGCGTGTCGCTCCAGGGTTGA Protein sequence : MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIAALSAFPSLLLFTTLFRLSLN IASTKSILLHAEAGNIIESFGQLVVGGNLVVGLVVFAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSG LLSTEEARKKRATLAVESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ IPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAAVPGFPAALFVLLAAALAFAGHRLSR KGSPSSGAARGQEQEALRAMQRSGAKADVPPILPRAPQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFP GVTMWIHPTLAAATFEVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQATHWI DEPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSPGLVAEVLKILPSTRIADVLRRLLEEQISI RNVRTIMESLVAWGAKEKDMLMLTEYVRGDLSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDAS RLVDRIQSLVGANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-133 | 57 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-133 | 57 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-134 | 57 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 1e-134 | 57 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 7e-132 | 57 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-134 | 57 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 5e-132 | 57 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-105 | 41 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| BURPS668_A1997 | YP_001062992.1 | HrcV family type III secretion protein | VFG0064 | Protein | 8e-104 | 42 |
