Gene Information

Name : sciM (BURPS668_A0159)
Accession : YP_001061165.1
Strain :
Genome accession: NC_009075
Putative virulence/resistance : Virulence
Product : SciM protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 139840 - 140322 bp
Length : 483 bp
Strand : +
Note : identified by match to protein family HMM PF05638

DNA sequence :
ATGTCGCACGACATTTTCCTCAAGATCAACGGTATCGATGGCGAGGCGGAAGACGCAACCCACAAGGGCGAAATCGAGGT
CTTGAGCTGGTCGTGGAACGTCAGTCAGCAATCGAACATGCACCTGGGTTCGGGGGGCGGCGCGGGCAAGGCGACGATCG
ATGATCTGCAGTTCGAACATTACATCGATCGCGCGAGCCCGAATCTCGTTCAATACTGCTTGCTCGGCAAGCATATCGAC
GAAGCCCGGCTCGTGGTGCGTAAGGCGGGCGGCAGCCCGCTCGAATACATCAAGCTCACGATGAGCGATGTGCTCGTTAC
GCAGGTGAGCCCGGCAGGCGTGGCTCAGGACGAATCGCGCCCGCGTGAGCTCGTTCGGCTGTCGTTTTCGCGCCTGAAGC
AAGAGTATGTCGTCCAGAACGCGCAGGGCGGCAGCGGCGGCGCAATCACCGCGACTTTCGACATCAAGAAGAACGCGGCG
TAA

Protein sequence :
MSHDIFLKINGIDGEAEDATHKGEIEVLSWSWNVSQQSNMHLGSGGGAGKATIDDLQFEHYIDRASPNLVQYCLLGKHID
EARLVVRKAGGSPLEYIKLTMSDVLVTQVSPAGVAQDESRPRELVRLSFSRLKQEYVVQNAQGGSGGAITATFDIKKNAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0302 NP_454882.1 conserved hypothetical protein Not tested SPI-6 Protein 5e-47 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sciM YP_001061165.1 SciM protein VFG2071 Protein 2e-24 44