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Name : gspE (BURPS668_0008) Accession : YP_001057063.1 Strain : Genome accession: NC_009074 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 10656 - 12149 bp Length : 1494 bp Strand : + Note : identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 DNA sequence : GTGACGCAGGCGCTCGCGCAAGGCGCCCCGGATCAGCCGGCCGCCGGCGCGCCGTCGCCGATCGCCGCGCGGCTGTTGCC GTACGGCTTCGCGAAGGCCGGCCAGATCCTGATCGCACACCAGCACGCGGACACGCTCGAGGTGTGGATCAGCGAGCGCA CGAGCTCGGCCGCGCTTGCCGAAGTCGCGCGCAACTTCGGCGCGATCTCGTTGCAGCGCATGCCGGCCGACGAGCTCGCG CAGGCGATCAACCATGCGTACGCGCGCCAGGACGGCAGCGCCGCGCAGATCGTCGGCGAGGTCGAGGGCGAAGTCGATCT GTCGCGGCTGATGCAGGACATCCCCGAGGTCGAGGATCTGCTCGAATCGGAAGACGACGCGCCGATCATCCGGATGATCA ACGCGCTCCTCACGCAAGCGGCGCGCGAGCAGGCGTCGGACATCCACATCGAGCCGTTCGAGAACGCGTCGGTCGTGCGC TTTCGCGTGGACGGCACGCTGCGCGACGTCGTGCGCCCGAAGAAGGCGCTGCACGGCGCGCTGATCTCGCGCATCAAGAT CATGGCGCAGCTCGACATCGCCGAAAAGCGCCTGCCGCAGGACGGCCGGATCACGCTGCGCGTGGGCGGGCGGCCCGTCG ACGTGCGGGTGTCGACGCTGCCGACCGGGCACGGCGAGCGCGCGGTGCTGCGTCTGCTGGAGAAGGATGCGCAGCGGCTG AATCTGGAAGCGCTCGGGATGGGCCGCGACACGCTCGTGCAGTTCGACAAGCTGATTTCCCGCCCGCACGGCATCGTGCT CGTGACGGGGCCGACCGGCTCGGGCAAGACGACGACGCTGTACGCGTCGATGTCGCGGCTCGAAACCGCGACGACCAACA TCATGACGGTCGAGGATCCGATCGAATACGATCTGTCCGGCATCGGCCAGACGCAGGTGAACGAGCGGATCGGGATGACG TTCGCGCGCGCGCTGCGCTCGATCCTGCGTCAGGACCCGGACATCATCATGATCGGCGAAATCCGCGATCTCGAAACCGC GCAGATCGCCGTGCAGGCGTCGCTCACGGGCCACCTGGTGCTCGCGACGCTGCACACGAACGACGCGGCGTCGGCCGTCA CGCGTCTCACCGACATGGGCGTCGAGCCGTACCTGCTCGCGTCTTCGCTGCTCGGCGTGCTCGCGCAGCGGCTCGTGCGC CAGCTCTGCCCGGCGTGCAAGGAGGAGCGGCACGAGGGCGGCCGCGCGGTCTGGCATCCGGTCGGCTGCGACAAGTGCGG GCATTCGGGCTACACGGGGCGTCGCGGCGTGTACGAGCTACTCGTCATCGACGATTCGATCCGCTCGCTGATTCACCGCA ACGCGGCCGATGCGGAGATTCTCGCCACCGGCCGCGCGAACGGGATGCGCACGCTGCGCGACGACGCCGAGCGCTGGCTC GCGGCGGGCGCGACGTCGCTCGAGGAAGTGCTGCGCGTGACGGGAGGCGCATAG Protein sequence : MTQALAQGAPDQPAAGAPSPIAARLLPYGFAKAGQILIAHQHADTLEVWISERTSSAALAEVARNFGAISLQRMPADELA QAINHAYARQDGSAAQIVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVR FRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQRL NLEALGMGRDTLVQFDKLISRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVEDPIEYDLSGIGQTQVNERIGMT FARALRSILRQDPDIIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVR QLCPACKEERHEGGRAVWHPVGCDKCGHSGYTGRRGVYELLVIDDSIRSLIHRNAADAEILATGRANGMRTLRDDAERWL AAGATSLEEVLRVTGGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-117 | 53 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-117 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_001057063.1 | general secretory pathway protein E | VFG0182 | Protein | 3e-126 | 56 |
| gspE | YP_001057063.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-117 | 52 |
| gspE | YP_001057063.1 | general secretory pathway protein E | VFG1876 | Protein | 1e-119 | 51 |
| gspE | YP_001057063.1 | general secretory pathway protein E | VFG0233 | Protein | 4e-87 | 49 |
| gspE | YP_001057063.1 | general secretory pathway protein E | VFG2426 | Protein | 8e-77 | 48 |
